[BioPython] local blast output

Sebastian Bassi sbassi at gmail.com
Mon Apr 30 21:26:50 UTC 2007


On 4/30/07, JASON HORTIATIS <jhortia1 at jhu.edu> wrote:
> Dear all,
> I'm a novice using biopython to run local blast searches and save the output to a file, but i've run into a problem becuase it seems as though the b_parser has a limit of 250 sequences, however my searches are returning far more than 250 sequences.  Does anyone know if the parser really is limited, and if so if it is possible to work around this?
> Thanks for the help,

There is no 250 limit in the parser. Please show us to code to help
you. Also tell us blast and biopython version.
Best,
SB.

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