[BioPython] plain txt blast output - xml instead
Michiel Jan Laurens de Hoon
mdehoon at c2b2.columbia.edu
Thu Jun 15 17:43:51 UTC 2006
Peter wrote:
>
> Looking at the raw XML file by hand, I could only see references to P1,
> the first protein.
>
> If the file had results for all four proteins I would expect to see:
>
> <?xml version="1.0"?>
> ... results for P1 ...
> <?xml version="1.0"?>
> ... results for P2 ...
> <?xml version="1.0"?>
> ... results for P3 ...
> <?xml version="1.0"?>
> ... results for P4 ...
>
There are results for all four proteins in the XML file, but they look
like this:
<Iteration>
<Iteration_iter-num>2</Iteration_iter-num>
<Iteration_query-ID>2_20304</Iteration_query-ID>
<Iteration_query-def>p2</Iteration_query-def>
...
</Iteration>
and so on. Could you let us know how this XML file was generated?
--Michiel
--
Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1130 St Nicholas Avenue
New York, NY 10032
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