[BioPython] blast for more than one sequence
Muthuraman, Manickam
manickam.muthuraman at wur.nl
Wed Jul 26 15:12:12 UTC 2006
hai all
I have tried to blast through the internet, i can suceed with one sequence but i need to blast more than one sequences through internet.
for example
m_cold.fasta has 5 sequences but the code which is been stated in book can do only for the first sequence and rest it does not
file_for_blast=open('m_cold.fasta','r')
f_iterator=Fasta.Iterator(file_for_blast)
#does the above line loop through the file and get each sequence for blasting, if so let me know how
i also tried another way but i do not want to confuse you by sending the whole script.
from
manickam
More information about the Biopython
mailing list