[BioPython] problems concerning Bio.PDB.NACCESS
Wolfgang Meyer
wolfgang.meyer at gmail.com
Wed Feb 22 17:48:12 EST 2006
Hi,
I found some problems in Bio.PDB.NACCESS.
the version of NACCESS.py I am using is Revision
*1.1*<http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/*checkout*/biopython/Bio/PDB/NACCESS.py?rev=1.1&cvsroot=biopython>from
*Sat Jul 30 15:59:48 2005 UTC*
The problems are in the function:
----------------
def process_asa_data(rsa_data):
....
asa = line[54:62]
vdw = line[62:68]
-----------------
first, shouldn't the input parameter be "asa_data" rather than "rsa_data" (I
suppose that's a typo resulted from copy-and paste)?
second, should "asa" and "vdw" values be converted to float?
regards,
--
Wolfgang Meyer
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