[BioPython] GenBank
dam6278
dam6278 at yahoo.fr
Thu Apr 27 07:53:24 UTC 2006
I have a proble with the GenBank parser :
When I execute :
from Bio import GenBank
gi_list = GenBank.search_for("Opuntia AND rpl16")
My output is :
Traceback (most recent call last):
File "<stdin>", line 1, in ?
File "/usr/lib/python2.4/site-packages/Bio/GenBank/__init__.py", line 1398, in search_for
retstart = start_id, retmax = max_ids)
File "/usr/lib/python2.4/site-packages/Bio/EUtils/DBIdsClient.py", line 294, in search
searchinfo = parse.parse_search(infile, [None])
File "/usr/lib/python2.4/site-packages/Bio/EUtils/parse.py", line 201, in parse_search
for ele in pom["TranslationStack"]:
File "/usr/lib/python2.4/site-packages/Bio/EUtils/POM.py", line 355, in __getitem__
raise IndexError, "no item matches"
IndexError: no item matches
Do you know where is my problem ?
Thank you for your help.
damien
More information about the Biopython
mailing list