[BioPython] BioPython/BioSQL Status? How to move forward?
Kael Fischer
kael.fischer at gmail.com
Tue Aug 30 18:10:04 EDT 2005
Hi all:
I am involved in a metagenomic project that needs a powerful, fast and
relational database. After some study of the schema I have decided I
would like to try to use BioSQL. Numerous issues with
BioPython/BioSQLhave come up.
Of course I have been doing a lot of Googlin' and CVS browsing to see
what people have found before me, with limited success. Although
BioSQL has some documentation problems, from what I can tell there are
a lot of BioPython specific problems too. At least there are problems
we can start to work on on the BioPython side.
I am wondering if there is interest here to get into the nuts and bolts of this.
In particular:
1) How much interest, in general, is there in BioSQL and BioPython
playing well together?
2) Where should I send my patches?
Rgds,
Kael
--
Kael Fischer, Ph.D
DeRisi Lab - Univ. Of California San Francisco
415-514-4320
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