[BioPython] Formating files for Clustalw
Jerome PANSANEL
j.pansanel at pansanel.net
Wed Aug 24 03:42:02 EDT 2005
Le Mardi 23 Août 2005 21:42, meames at itsa.ucsf.edu a écrit :
> Hi all
>
...
Hi,
1. clustalw -infile=file_to_align -outfile=test.aln is working very well by me
(clustalw 1.83)
2. In your code, how looks your test.aln file ?
Is it like an clustalw file ?
Is your 'test.aln' file like this :
CLUSTAL W (1.83) multiple sequence alignment
sptrembl|Q00647|Q00647
MGHSRRPAGGEKKSRFGRSKAAADVGDGRQAGGKPQVRKAVFESTK
KKEI
gi|17507983|ref|NP_492393.1|
MAFHWQSK------------------------------------VNVQHV
*.. :. .: :.:
sptrembl|Q00647|Q00647
GVSDLTLLSKISNEAINDNLKLRFQHDEIYTYIGHVLVSVNPFRDLGIYT
gi|17507983|ref|NP_492393.1|
GVDDMVLLPKLTEQSIVENLKKRLQANSIFTYIGPVLISVNPFKQMPYFT
**.*:.**.*:::::* :*** *:* :.*:****
**:*****::: :*
...
Jerome Pansanel
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