[BioPython] contig mapping in BioPython
Andrew Nunberg
anunberg at oriongenomics.com
Thu Mar 11 11:20:43 EST 2004
There is something similar in Bio.Sequencing
Have you checked out Biopython from CVS?
On a totally different note:
I agree that as a simple user of biopython that the documentation can be
confusing because python does not use special characters to denote basic
data types(variables,lists, dictionary
And I recollect that in other places the object to pass or what is returned
is not documented either(ie you pass a Seq object and get a SeqFeature
object in return...
If I ever get any time, or if I get so fed up to make the time, I will go
through some of the libraries I use most often and try to create more
documentation
Andy
> I'm thinking about writing some BioPython modules for contig/genome mapping
> - something akin to BioPerl's Bio::Assembler::contig - for use in genome
> mapping (and whatever else it ends up lending itself to).
>
> Can't find any references to any such projects that are ongoing but would
> like to check if anyone else is working on this before I put in too much
> time in reinventing more wheels than we need.
> Anyone think this would/would not be useful?
>
> Thanks for your input...
>
> ========================
> Alan Wardroper
> ========================
>
>
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--
Andrew Nunberg
Bioinformagician
Orion Genomics
(314)-615-6989
www.oriongenomics.com
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