[BioPython] biopython build errors

[Daniel Rubin]

Hi,
I got the latest biopython from cvs and tried python
setup.py on my solaris9 machine (also have python
2.3.4 and Numeric 23.1 installed and latest
mxTextTools installed). I get a lot of errors (a few
shown below) at this step in the build process. I get
similar errors if I try biopython 1.3. Any ideas?

c++ -I/home/rubin/include/python2.3 -c
Bio/KDTree/KDTree.cpp -o
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.o
c++ -I/home/rubin/include/python2.3 -c
Bio/KDTree/KDTree.swig.cpp -o
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
In file included from
/home/rubin/include/python2.3/Python.h:8,
                 from Bio/KDTree/KDTree.swig.cpp:26:
/home/rubin/include/python2.3/pyconfig.h:862:1:
warning: "_XOPEN_SOURCE" redefined
Bio/KDTree/KDTree.swig.cpp:1:1: warning: this is the
location of the previous definition
c++ -shared
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.o
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
-lstdc++ -o
build/lib.solaris-2.9-sun4u-2.3/Bio/KDTree/_CKDTree.so
Text relocation remains                        
referenced
    against symbol                  offset      in
file
<unknown>                           0x17f0     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x17f4     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x17f8     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x17fc     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x1800     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x1804     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x19a4     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x19a8     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o
<unknown>                           0x19ac     
build/temp.solaris-2.9-sun4u-2.3/Bio/KDTree/KDTree.swig.o



		
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