[BioPython] More objects on BLAST parser
Sebastian Bassi
sbassi at asalup.org
Mon Jun 7 23:54:23 EDT 2004
Hello,
I am working with this code:
from Bio.Blast import NCBIStandalone
b_parser = NCBIStandalone.BlastParser()
bl=open("C:\\bioinfo-adv\\primervsclones\\MS1248-For","r")
b_record= b_parser.parse(bl)
for alignment in b_record.alignments:
for hsp in alignment.hsps:
print alignment.title
print alignment.length
print hsp.expect
bl.close()
Works great. Now I need to know what other objects could I retrieve with
this parser. For example I'd like to retrieve:
The lenght of the input/query sequence.
The lenght of the hit sequence.
The identities (like 20/21).
The name of the query sequence.
Another question: Is there a way (looking at the source code) to know
all the available objects?
--
Best regards,
//=\ Sebastian Bassi - Diplomado en Ciencia y Tecnologia, UNQ //=\
\=// IT Manager Advanta Seeds - Balcarce Research Center - \=//
//=\ Pro secretario ASALUP - www.asalup.org - PGP key available //=\
\=// E-mail: sbassi at genesdigitales.com - ICQ UIN: 3356556 - \=//
http://Bioinformatica.info
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