[BioPython] parsing error in Bio.Sequencing.Ace
Frank Kauff
fkauff at duke.edu
Mon Apr 12 09:01:26 EDT 2004
Hi Hyung-Yong Kim,
On Mon, 2004-04-12 at 03:34, Hyung-Yong Kim wrote:
...
> This problem seems that because parser don't clarify the distinction between 'CT' record and nucleic acid '^CT'.
> Temporary solution is to modify 362 line of Ace.py
>
> if line.startswith('CT'): --> if line.startswith('CT{'):
>
> It needs to be modified.
>
It does! In theory, the parser should not run into this problem - are
you using the newest ace.py from cvs? The ace parser has been updated
after the recent 'official' release of biopython. Anyway, please send me
your input file so I can have a closer look why this happens and I can
fix it.
Frank
> Hyung-Yong Kim
> ---------------------------------
> National Livestock Research Institute (Korea)
> Division of Animal Genomics & Bioinformatics
> http://bioinfo.sarang.net
>
>
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> BioPython mailing list - BioPython at biopython.org
> http://biopython.org/mailman/listinfo/biopython
--
Frank Kauff
Dept. of Biology
Duke University
Box 90338
Durham, NC 27708
USA
Phone 919-660-7382
Fax 919-660-7293
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