[BioPython] Zerg BLAST parser

Yves Bastide Yves.Bastide at irisa.fr
Tue Sep 2 03:42:40 EDT 2003


Leighton Pritchard wrote:
>> > [...] the Zerg BLAST parser (http://bioinfo.iq.usp.br/zerg/) [...] only
>> > had a wrapper for Perl, so I knocked one up for Python [...] at
>> > http://bioinf.scri.sari.ac.uk/lp/pyzerg.shtml

Thanks!

A minor note (I don't know Pyrex): can Zerg constants, like QUERY_NAME, 
be retained in pyzerg?

[...]

> 
> On a tangent, would anyone be interested in a publication-quality genome 
> schematic (linear and circular genome diagram, with labels, scales and 
> plots) drawing module?  I have one that would probably benefit from 
> public release and comment.

You bet!

> 
> 
> Dr Leighton Pritchard AMRSC
> PPI, Scottish Crop Research Institute
> Invergowrie, Dundee, DD2 5DA, Scotland, UK
> L.Pritchard at scri.sari.ac.uk
> PGP key 47B4A485: http://www.keyserver.net http://pgp.mit.edu
> 

yves



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