[BioPython] help for searching overlapping occurrences

[Sebastian Bassi]

Alessandro wrote:

> I' am looking for a method like finditer from module re but returning all the occurrences of a pattern in a straing even if overlapping to each other. Thanks a lot.
> Alessandro Coppe

You may try this:

e-Paper:
tacg, a grep for DNA (Harry J Mangalam).
BMC Bioinformatics 2002, 3:8.
http://www.biomedcentral.com/1471-2105/3/8
Software:
http://tacg.sourceforge.net

I never used this program but it seems it could be useful for this kind
of job.


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Best regards,

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