[BioPython] problem installing mxTextTools
Hugh R
hugh at parvati.msu.montana.edu
Thu Jun 19 13:03:11 EDT 2003
Hello, I am trying to install biopython. I've run into trouble straight away,
trying to install the mxTextTools stuff.
I following the steps, download, gunzip, tar, then I try the python setup.py
build and have a problem with gcc and an undeclared varialbe, apparently.
Here is the full text of whats printed out. I grepped around a bit and can't
even find __builtin_va_alist. I tried it running as root, and as myself, in
different directories, and got the same thing.
I believe its the latest python, gcc 2.95.2, sun solaris, but I've just
started working on this system. Thanks for any thoughts.
> python setup.py build
running build
running mx_autoconf
macros to define: []
macros to undefine: []
updated build_ext with autoconf setup
running build_ext
building extension "mx.DateTime.mxDateTime.mxDateTime" (required)
building 'mx.DateTime.mxDateTime.mxDateTime' extension
creating build
creating build/temp.solaris-2.8-sun4u-2.2
creating build/temp.solaris-2.8-sun4u-2.2/mx
creating build/temp.solaris-2.8-sun4u-2.2/mx/DateTime
creating build/temp.solaris-2.8-sun4u-2.2/mx/DateTime/mxDateTime
creating build/temp.solaris-2.8-sun4u-2.2/mx/DateTime/mxDateTime/mxDateTime
gcc -Wall -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
-Imx/DateTime/mxDateTime -I/opt/local/include/pythor/include
-I/usr/local/include -c mx/DateTime/mxDateTime/mxDateTime.c -o
build/temp.solaris-2.8-sun4u-2.2/mx/xDateTime/mxDateTime/mxDateTime.o
In file included from mx/DateTime/mxDateTime/mx.h:51,
from mx/DateTime/mxDateTime/mxDateTime.c:41:
mx/DateTime/mxDateTime/mxstdlib.h: In function `mxDebugPrintf':
mx/DateTime/mxDateTime/mxstdlib.h:192: `__builtin_va_alist' undeclared (first
use in this function)
mx/DateTime/mxDateTime/mxstdlib.h:192: (Each undeclared identifier is reported
only once
mx/DateTime/mxDateTime/mxstdlib.h:192: for each function it appears in.)
mx/DateTime/mxDateTime/mxstdlib.h:150: warning: `args' might be used
uninitialized in this function
error: command 'gcc' failed with exit status 1
>
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