[BioPython] Whitespace in sequences
Iddo Friedberg
idoerg at burnham.org
Thu Feb 20 09:54:11 EST 2003
Paul-Michael Agapow wrote:
>
> Thanks Iddo,
>
>> I guess you were using biopython on a Mac/Windows box, where '\r' or
>> '\r\n' is a
>> newline. Also, it looks like you were using the Bio.Fasta package to
>> read... the bug shouldn't occur within Bio.SeqIO.FASTA.FastaReader
>> (although it will within SeqIO.FASTA.FastaWriter!)
>
>
> Picked it straight off - I'm using MacOS X. However, I'm using
> Bio.SeqIO.FASTA.FastaReader.
Well that's funny... Jeff, Yair, any comment on this? I believe you have
Macs too.
Which IMHO does not preclude the `\n' --> os.linesep overhaul required.
I wonder why this bug was hit upon only now. Thanks very much for
reporting this.
Cheers all,
Iddo
--
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
USA
Tel: +1 (858) 646 3100 x3516
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http://bioinformatics.ljcrf.edu/~iddo
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