[BioPython] Helping out...
Jeffrey Chang
jchang at smi.stanford.edu
Mon Feb 10 17:39:42 EST 2003
There's code to download both GenBank and PubMed ids. A script that
will download the ids given accessions from a file should be trivial
(untested):
from Bio import GenBank
ids = [x.strip() for x in open("FILENAME")]
def print_rec(rec):
print rec
GenBank.download_many(ids, print_rec)
Andrew Dalke has an EUtils package that might be helpful if you need
to do more sophisticated things.
Jeff
On Mon, Feb 10, 2003 at 05:25:12PM -0800, Sep Dadsetan wrote:
> Hey,
> I wanted to know if anybody has written a module or script that
> does batch retrieval from Entrez given a list of accession numbers from
> a file?
>
> Thanks!
>
> Sep
>
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