[BioPython] biopython 1.21 problem with Martel
Francisco Domingues
doming at mpi-sb.mpg.de
Thu Aug 28 12:35:25 EDT 2003
Got python-xml.
Biopython installation and tests work fine now.
Thanks Andreas
Francisco
Andreas Kuntzagk wrote:
>>I am running SuSe Linux 8.1, I have python 2.2.1
>>
>>
>
>Me too.
>
>
>
>>Still it fails the tests:
>>...biopython-1.21/Martel> python setup.py installtest
>>running installtest
>>###### running tests in test_Expression ###############
>>Traceback (most recent call last):
>> File "setup.py", line 158, in ?
>> File "/usr/lib/python2.2/distutils/core.py", line 138, in setup
>> dist.run_commands()
>> File "/usr/lib/python2.2/distutils/dist.py", line 893, in run_commands
>> self.run_command(cmd)
>> File "/usr/lib/python2.2/distutils/dist.py", line 913, in run_command
>> cmd_obj.run()
>> File "setup.py", line 139, in run
>> File "run_tests.py", line 16, in main
>> module = __import__(name)
>> File "test_Expression.py", line 3, in ?
>> from Martel import Re
>> File "/usr/lib/python2.2/site-packages/Martel/__init__.py", line 6, in ?
>> import Expression
>> File "/usr/lib/python2.2/site-packages/Martel/Expression.py", line 31,
>>in ?
>> from xml.sax import xmlreader
>>ImportError: No module named xml.sax
>>
>>
>
>Looks like the xml-packages are not installed. Pleas install the
>python-xml rpm from your installation-media and try again.
>
>HtH, Andreas
>
>
>
More information about the BioPython
mailing list