[BioPython] Blast/NCBIWWW parser Problems

[Jeffrey Chang]

It's likely that the format changed.  Could you please send some
sample output that breaks the parser?  It will help us track down the
problem more precisely.  Also, if the format has changed, it's
possible that there are multiple differences, and we'd want to get all
those as well.

You can send it directly to me as an attachment.

Jeff


On Fri, Sep 20, 2002 at 04:39:08PM +0900, ±è½Â¹ü wrote:
> Hi.
> 
> Maybe.. Blast format changed again.
> 
> I think, in NCBIWWW/_scan_one_pairwise_alignment method 
> "read_and_call_until(uhandle, consumer.noevent, contain='<PRE>')" is needed before read_and_call(....<PRE>).
> 
> and in NCBIWWW/_scan_alignment_header method
> alignment header can be three lines.
> so Parser can not find "Length =" string.
> 
> check it please.
> 
> I used Python 2.2 and biopython-1.00a4, of course with a updated NCBIWWW.py in CVS
> 
> 
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