[BioPython] (no subject)

[Jeffrey Chang]

That refers to the htbin-post CGI, no?  This function hits hitting
query.fcgi, which should be safe.

Hmmm...  We do have scripts that hit things like PmFetch, which will
be obsolete.  So I guess we will have to migrate.  I'll file a bug for
the database...

Jeff



On Tue, Sep 17, 2002 at 08:13:26AM -0400, Jason Stajich wrote:
> You ought to migrate to the new e-utils before the end of December as the
> old style CGIs will go away on Jan 1, 2003 I believe.
> 
> -jason
> On Tue, 17 Sep 2002, Jeffrey Chang wrote:
> 
> > Hi Aedin,
> >
> > Does NCBI.query(XXX, dispmax=50) not work?
> >
> > I'm not sure how to use the mode parameter -- I can't find it
> > documented on NCBI's website for the CGI script.
> > http://www.ncbi.nlm.nih.gov/entrez/query/static/linking.html
> >
> > While it would be useful to migrate our code to the new utilities,
> > there's no plans to implement them in the near future.  I would be
> > interested in hearing from people who would like to do so, though!
> >
> > Jeff
> >
> >
> >
> > On Mon, Sep 16, 2002 at 01:09:40PM +0100, Culhane, Aedin wrote:
> > > Dear Biopython
> > > I am trying to query and retrieve batches of sequences from Entrez using
> > > NCBI.query, however I don't seem to be able to use displmax (to allow more
> > > sequences than just 20) or mode (plain text).
> > >
> > > Also NCBI seem to be changing pmfetch, pmsearch etc for newer utilities
> > > http://www.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi.  Are there plans
> > > to update these modules for these?
> > >
> > > Thanks a million
> > > Aedin
> > >
> > > -------------------------------
> > > Aedín  Culhane, PhD
> > > Biochemistry Department
> > > University College Cork
> > > Cork, Ireland
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> >
> 
> -- 
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
> 
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