[BioPython] blast
ekarac@ug.bilkent.edu.tr
ekarac@ug.bilkent.edu.tr
Sun, 24 Nov 2002 04:20:36 EET
Hello,
I have written a code for blast but it gives a syntax error as
"unexpected end of stream."
the code is:
from Bio.Blast import NCBIWWW
query='AC092140'
b_results = NCBIWWW.blast('blastn', 'human genome', query)
b_parser = NCBIWWW.BlastParser()
b_record = b_parser.parse(b_results)
for alignment in b_record.alignments:
for hsp in alignment.hsps:
if hsp.expect==0.0:
print alignment.title
could you help me sove this problem please?
thank you,
Esra Karaca