[BioPython] problem with Blast/NCBIWWW parser ?
Jeffrey Chang
jchang@smi.stanford.edu
Tue, 28 May 2002 17:48:18 -0700
It looks like the format changed again. I've updated the NCBIWWW.py
file. Please download the latest one from CVS (or use the following
patch) and let me know if there are further problems!
Jeff
Index: NCBIWWW.py
===================================================================
RCS file: /home/repository/biopython/biopython/Bio/Blast/NCBIWWW.py,v
retrieving revision 1.22
retrieving revision 1.23
diff -c -r1.22 -r1.23
*** NCBIWWW.py 9 Feb 2002 06:16:01 -0000 1.22
--- NCBIWWW.py 29 May 2002 00:41:57 -0000 1.23
***************
*** 385,390 ****
--- 385,391 ----
#
attempt_read_and_call(uhandle, consumer.noevent, start='<PRE>')
+ attempt_read_and_call(uhandle, consumer.noevent, blank=1)
read_and_call(uhandle, consumer.score, start=' Score')
read_and_call(uhandle, consumer.identities, start=' Identities')
# BLASTN
On Sat, May 25, 2002 at 07:21:49PM +0200, Catherine Letondal wrote:
> Hi,
>
> I have dowloaded the last version of
> biopython/Bio/Blast/NCBIWWW.py file from CVS, and
> I still get an error when I run it on a Blast report just obtained from
> the NCBI:
>
> Traceback (most recent call last):
> File "exercises/blast_swissprot_parse.py", line 6, in ?
> record = blast_parser.parse(blast_results)
> File "/usr/local/lib/python2.2/site-packages/Bio/Blast/NCBIWWW.py",
> line 47, i
> n parse
> self._scanner.feed(handle, self._consumer)
> File "/usr/local/lib/python2.2/site-packages/Bio/Blast/NCBIWWW.py",
> line 99, i
> n feed
> self._scan_rounds(uhandle, consumer)
> File "/usr/local/lib/python2.2/site-packages/Bio/Blast/NCBIWWW.py",
> line 203,
> read_and_call(uhandle, consumer.score, start=' Score')
> File "/usr/local/lib/python2.2/site-packages/Bio/ParserSupport.py",
> line 331,
> in read_and_call
> raise SyntaxError, errmsg
> SyntaxError: Line does not start with ' Score':
>
> I attach the remote blast result.
>
> Could someone help?
>
> Thanks in advance,
>
> --
> Catherine Letondal -- Pasteur Institute Computing Center
> <HTML>
> <HEAD>
> </HEAD>
> <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
> <IMG SRC="images/head_results.gif" ALT="Header of the page" BORDER="0"NAME="BlastHeaderGif" WIDTH="600" HEIGHT="45" ALIGN="middle">
> <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST"><input name="ALIGNMENTS" type="hidden" value="50"><input name="AUTO_FORMAT" type="hidden" value="on"><input name="CLIENT" type="hidden" value="web"><input name="DESCRIPTIONS" type="hidden" value="100"><input name="EXPECT" type="hidden" value="1"><input name="HITLIST_SIZE" type="hidden" value="100"><input name="I_THRESH" type="hidden" value="0.001"><input name="LAYOUT" type="hidden" value="OneWindow"><input name="NCBI_GI" type="hidden" value="checked"><input name="PAGE" type="hidden" value="Proteins"><input name="RID" type="hidden" value="1022346244-01943-22277"><input name="RTOE" type="hidden" value="4"><input name="SHOW_OVERVIEW" type="hidden" value="checked"><input name="STEP_NUMBER" type="hidden" value="1"><input name="defline" type="hidden" value="Click on the image below for detailed CD-Search results"><input name="CMD" type="hidden" value="Get"></form>
> <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" TARGET=""><input name="ALIGNMENTS" type="hidden" value="50"><input name="AUTO_FORMAT" type="hidden" value="on"><input name="CLIENT" type="hidden" value="web"><input name="DESCRIPTIONS" type="hidden" value="100"><input name="EXPECT" type="hidden" value="1"><input name="HITLIST_SIZE" type="hidden" value="100"><input name="I_THRESH" type="hidden" value="0.001"><input name="LAYOUT" type="hidden" value="OneWindow"><input name="NCBI_GI" type="hidden" value="checked"><input name="PAGE" type="hidden" value="Proteins"><input name="RID" type="hidden" value="1022346244-01943-22277"><input name="RTOE" type="hidden" value="4"><input name="SHOW_OVERVIEW" type="hidden" value="checked"><input name="STEP_NUMBER" type="hidden" value="1"><input name="CMD" type="hidden" value="Put">
>
> <p><!--
> QBlastInfoBegin
> Status=READY
> QBlastInfoEnd
> --><p><TITLE> RID=1022346244-01943-22277, CERU_HUMAN STANDARD; PRT; 1065 AA., 1065 bases, 78C9415D checksum. </TITLE>
> <b>BLASTP 2.2.3 [Apr-24-2002]</b>
>
> <pre>
> <b><a href="http://www.ncbi.nlm.nih.gov/htbin-
> post/Entrez/query?uid=9254694&form=6&db=m&Dopt=r">Reference</a>:</b>
> Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
> Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
> "Gapped BLAST and PSI-BLAST: a new generation of protein database search
> programs", Nucleic Acids Res. 25:3389-3402.
> <p>
> RID: 1022346244-01943-22277
> <p>
> <b>Query=</b> CERU_HUMAN STANDARD; PRT; 1065 AA., 1065
> bases, 78C9415D checksum.
> (1065 letters)
>
> <p>
> <b>Database:</b> Non-redundant SwissProt sequences
> 109,592 sequences; 40,014,366 total letters
>
> <p> <p>If you have any problems or questions with the results of this search <br>please refer to the <b><a href=http://www.ncbi.nlm.nih.gov/blast/blast_FAQs.html>BLAST FAQs</a></b><br><p>
> <a href="Blast.cgi?CMD=Get&RID=1022346244-01943-22277&FORMAT_OBJECT=TaxBlast" TARGET="Taxonomy BLAST Results for 1022346244-01943-22277">Taxonomy reports</a>
> <BR>
> <PRE>
>
>
> Score E
> Sequences producing significant alignments: (bits) Value
>
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00116117&dopt=GenPept" >sp|P00450|CERU_HUMAN</a> CERULOPLASMIN PRECURSOR (FERROXIDASE) <a href = #116117>2235</a> 0.0
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493322&dopt=GenPept" >sp|Q61147|CERU_MOUSE</a> CERULOPLASMIN PRECURSOR (FERROXIDASE) <a href = #2493322>1868</a> 0.0
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02506226&dopt=GenPept" >sp|P13635|CERU_RAT</a> CERULOPLASMIN PRECURSOR (FERROXIDASE) <a href = #2506226>1851</a> 0.0
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00119767&dopt=GenPept" >sp|P00451|FA8_HUMAN</a> Coagulation factor VIII precursor (Proc... <a href = #119767>426</a> e-119
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00544272&dopt=GenPept" >sp|Q06194|FA8_MOUSE</a> Coagulation factor VIII precursor (Proc... <a href = #544272>417</a> e-116
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02506228&dopt=GenPept" >sp|P12263|FA8_PIG</a> Coagulation factor VIII precursor (Procoa... <a href = #2506228>416</a> e-115
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493324&dopt=GenPept" >sp|Q28107|FA5_BOVIN</a> Coagulation factor V precursor (Activat... <a href = #2493324>405</a> e-112
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18202922&dopt=GenPept" >sp|Q9GLP1|FA5_PIG</a> Coagulation factor V precursor (Activated... <a href = #18202922>402</a> e-111
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00462045&dopt=GenPept" >sp|P12259|FA5_HUMAN</a> Coagulation factor V precursor (Activat... <a href = #462045>399</a> e-110
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01351670&dopt=GenPept" >sp|Q09920|YAK8_SCHPO</a> Putative multicopper oxidase C1F7.08 p... <a href = #1351670> 55</a> 9e-07
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833227&dopt=GenPept" >sp|Q12541|LAC1_AGABI</a> LACCASE I PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833227> 46</a> 3e-04
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833228&dopt=GenPept" >sp|Q12542|LAC2_AGABI</a> LACCASE II PRECURSOR (BENZENEDIOL:OXYG... <a href = #2833228> 46</a> 3e-04
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493321&dopt=GenPept" >sp|Q40588|ASO_TOBAC</a> L-ASCORBATE OXIDASE PRECURSOR (ASCORBAS... <a href = #2493321> 45</a> 0.001
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00114270&dopt=GenPept" >sp|P14133|ASO_CUCSA</a> L-ASCORBATE OXIDASE PRECURSOR (ASCORBAS... <a href = #114270> 44</a> 0.002
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00543859&dopt=GenPept" >sp|P37064|ASO_CUCPM</a> L-ASCORBATE OXIDASE (ASCORBASE) (ASO) <a href = #543859> 43</a> 0.003
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02827764&dopt=GenPept" >sp|P24792|ASO_CUCMA</a> L-ASCORBATE OXIDASE PRECURSOR (ASCORBASE) <a href = #2827764> 42</a> 0.005
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833234&dopt=GenPept" >sp|Q12719|LAC4_TRAVE</a> LACCASE 4 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833234> 42</a> 0.008
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02842755&dopt=GenPept" >sp|Q99055|LAC4_TRAVI</a> LACCASE 4 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2842755> 42</a> 0.008
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833229&dopt=GenPept" >sp|Q12570|LAC1_BOTCI</a> LACCASE (BENZENEDIOL:OXYGEN OXIDOREDUC... <a href = #2833229> 40</a> 0.017
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02829462&dopt=GenPept" >sp|P56193|LAC1_THACU</a> LACCASE 1 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2829462> 40</a> 0.023
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833189&dopt=GenPept" >sp|Q02075|LAC2_THACU</a> LACCASE 2 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833189> 40</a> 0.023
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00400156&dopt=GenPept" >sp|Q01679|LAC1_PHLRA</a> Laccase precursor (Benzenediol:oxygen ... <a href = #400156> 39</a> 0.039
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833199&dopt=GenPept" >sp|Q03966|LAC1_CRYPA</a> LACCASE PRECURSOR (BENZENEDIOL:OXYGEN ... <a href = #2833199> 39</a> 0.050
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493323&dopt=GenPept" >sp|P78591|FET3_CANAL</a> IRON TRANSPORT MULTICOPPER OXIDASE PRE... <a href = #2493323> 39</a> 0.050
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18281739&dopt=GenPept" >sp|Q99056|LAC5_TRAVI</a> Laccase 5 precursor (Benzenediol:oxyge... <a href = #18281739> 39</a> 0.050
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02842752&dopt=GenPept" >sp|Q99044|LAC1_TRAVI</a> LACCASE 1 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2842752> 38</a> 0.086
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01730082&dopt=GenPept" >sp|Q02497|LAC1_CORHI</a> Laccase precursor (Benzenediol:oxygen ... <a href = #1730082> 38</a> 0.086
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02842753&dopt=GenPept" >sp|Q99046|LAC2_TRAVI</a> LACCASE 2 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2842753> 38</a> 0.11
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01175947&dopt=GenPept" >sp|P43561|FET5_YEAST</a> Iron transport multicopper oxidase FET... <a href = #1175947> 38</a> 0.11
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833233&dopt=GenPept" >sp|Q12718|LAC2_TRAVE</a> Laccase 2 precursor (Benzenediol:oxyge... <a href = #2833233> 38</a> 0.11
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833190&dopt=GenPept" >sp|Q02079|LAC3_THACU</a> LACCASE 3 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833190> 37</a> 0.15
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833237&dopt=GenPept" >sp|Q12739|LAC2_PLEOS</a> LACCASE 2 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833237> 37</a> 0.15
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833232&dopt=GenPept" >sp|Q12717|LAC5_TRAVE</a> LACCASE 5 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833232> 37</a> 0.15
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833235&dopt=GenPept" >sp|Q12729|LAC1_PLEOS</a> LACCASE 1 PRECURSOR (BENZENEDIOL:OXYGE... <a href = #2833235> 37</a> 0.19
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833200&dopt=GenPept" >sp|Q04399|YD56_YEAST</a> PUTATIVE MULTICOPPER OXIDASE YDR506C <a href = #2833200> 37</a> 0.19
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02828219&dopt=GenPept" >sp|P38993|FET3_YEAST</a> Iron transport multicopper oxidase FET... <a href = #2828219> 37</a> 0.25
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02827765&dopt=GenPept" >sp|P25006|NIR_ACHCY</a> COPPER-CONTAINING NITRITE REDUCTASE PRE... <a href = #2827765> 36</a> 0.43
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=13632794&dopt=GenPept" >sp|Q47452|PCOA_ECOLI</a> Copper resistance protein A precursor <a href = #13632794> 36</a> 0.43
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20137839&dopt=GenPept" >sp|Q8ZRS2|CUEO_SALTY</a> Blue copper oxidase cueO precursor (Co... <a href = #20137839> 35</a> 0.56
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20137822&dopt=GenPept" >sp|Q8Z9E1|CUEO_SALTI</a> Blue copper oxidase cueO precursor (Co... <a href = #20137822> 35</a> 0.56
> <a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00116921&dopt=GenPept" >sp|P12374|COPA_PSESM</a> Copper resistance protein A precursor <a href = #116921> 35</a> 0.73
> </PRE>
> <CENTER><b><FONT color="green">Alignments</FONT></b></CENTER>
> <PRE>
> ><a name = 116117></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00116117&dopt=GenPept" >sp|P00450|CERU_HUMAN</a> CERULOPLASMIN PRECURSOR (FERROXIDASE)
> Length = 1065
>
> Score = 2235 bits (5792), Expect = 0.0
> Identities = 1065/1065 (100%), Positives = 1065/1065 (100%)
>
> Query: 1 MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGP 60
> MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGP
> Sbjct: 1 MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGP 60
>
> Query: 61 DRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFH 120
> DRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFH
> Sbjct: 61 DRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFH 120
>
> Query: 121 SHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH 180
> SHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH
> Sbjct: 121 SHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH 180
>
> Query: 181 SHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC 240
> SHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC
> Sbjct: 181 SHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC 240
>
> Query: 241 SEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFH 300
> SEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFH
> Sbjct: 241 SEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFH 300
>
> Query: 301 GQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKS 360
> GQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKS
> Sbjct: 301 GQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKS 360
>
> Query: 361 SSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSY 420
> SSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSY
> Sbjct: 361 SSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSY 420
>
> Query: 421 KKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGV 480
> KKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGV
> Sbjct: 421 KKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGV 480
>
> Query: 481 RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYY 540
> RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYY
> Sbjct: 481 RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYY 540
>
> Query: 541 SAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMF 600
> SAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMF
> Sbjct: 541 SAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMF 600
>
> Query: 601 TTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYF 660
> TTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYF
> Sbjct: 601 TTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYF 660
>
> Query: 661 SGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRR 720
> SGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRR
> Sbjct: 661 SGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRR 720
>
> Query: 721 QSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYK 780
> QSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYK
> Sbjct: 721 QSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYK 780
>
> Query: 781 KVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ 840
> KVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ
> Sbjct: 781 KVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ 840
>
> Query: 841 TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVC 900
> TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVC
> Sbjct: 841 TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVC 900
>
> Query: 901 RRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHA 960
> RRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHA
> Sbjct: 901 RRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHA 960
>
> Query: 961 INGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFP 1020
> INGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFP
> Sbjct: 961 INGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFP 1020
>
> Query: 1021 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKSG 1065
> GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKSG
> Sbjct: 1021 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKSG 1065
> </PRE>
>
>
> <PRE>
> ><a name = 2493322></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493322&dopt=GenPept" >sp|Q61147|CERU_MOUSE</a> CERULOPLASMIN PRECURSOR (FERROXIDASE)
> Length = 1062
>
> Score = 1868 bits (4838), Expect = 0.0
> Identities = 889/1067 (83%), Positives = 963/1067 (89%), Gaps = 7/1067 (0%)
>
> Query: 1 MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGP 60
> MK L+L F+FL S+ A A++KHY+IGI E WDYAS EKKLISVDTE SN YLQNGP
> Sbjct: 1 MKFLLLSTFIFLYSSLALARDKHYFIGITEAVWDYASGTEEKKLISVDTEQSNFYLQNGP 60
>
> Query: 61 DRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFH 120
> DRIGR YKKALY +YTD TF TI+KP WLGFLGP+IKAE DKVYVHLKNLASR YTFH
> Sbjct: 61 DRIGRKYKKALYFEYTDGTFSKTIDKPAWLGFLGPVIKAEVEDKVYVHLKNLASRIYTFH 120
>
> Query: 121 SHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH 180
> +HG+TY KE+EGA+YPDNTTDFQRADDKV PG+QY Y+L A E SPGEGD NCVTRIYH
> Sbjct: 121 AHGVTYTKEYEGAVYPDNTTDFQRADDKVLPGQQYVYVLHANEP-SPGEGDSNCVTRIYH 179
>
> Query: 181 SHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC 240
> SH+DAPKDIASGLIGPLI+CKK SL KEKEK+ID+EFV+MFSVVDEN SWYLEDNIKT+C
> Sbjct: 180 SHVDAPKDIASGLIGPLILCKKGSLYKEKEKNIDQEFVLMFSVVDENLSWYLEDNIKTFC 239
>
> Query: 241 SEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFH 300
> SEPEKVDKDNEDFQESNRMYS+NGYTFGSLPGLSMCA DRVKWYLFGMGNEVDVH+AFFH
> Sbjct: 240 SEPEKVDKDNEDFQESNRMYSINGYTFGSLPGLSMCAADRVKWYLFGMGNEVDVHSAFFH 299
>
> Query: 301 GQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKS 360
> GQALT++NY+ D INLFPATL DAYMVAQNPG WMLSCQNLNHLKAGLQAFFQVQ+CNK
> Sbjct: 300 GQALTSRNYQTDIINLFPATLIDAYMVAQNPGVWMLSCQNLNHLKAGLQAFFQVQDCNKP 359
>
> Query: 361 SSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSY 420
> SSKDNIRGKHVRHYYIAAEE+IWNYAPSGIDIFT+E LTA GSDS VFFEQG TRIGGSY
> Sbjct: 360 SSKDNIRGKHVRHYYIAAEEVIWNYAPSGIDIFTEEKLTASGSDSGVFFEQGATRIGGSY 419
>
> Query: 421 KKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGV 480
> KK+ YREYTD SFTNRKERGP+EEHLGILGPVIWAEVGDTI+VTFHNKG + LSI+P+GV
> Sbjct: 420 KKMAYREYTDGSFTNRKERGPDEEHLGILGPVIWAEVGDTIKVTFHNKGQHHLSIQPMGV 479
>
> Query: 481 RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYY 540
> F NEGTY Y P S +ASHVAP TFTYEWTVPKE+GPT ADPVCL+KMYY
> Sbjct: 480 SFTAENEGTY----YGPPGASSQQAASHVAPKXTFTYEWTVPKEMGPTYADPVCLSKMYY 535
>
> Query: 541 SAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMF 600
> SAVDPTKDIFTGLIGPMKICKKGSL A+GRQKDVDKEFYLFPTVFDENESLLL+DNIRMF
> Sbjct: 536 SAVDPTKDIFTGLIGPMKICKKGSLLADGRQKDVDKEFYLFPTVFDENESLLLDDNIRMF 595
>
> Query: 601 TTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYF 660
> T APDQVDKEDEDFQESNKMHSMNGFMYGNQ MC G+S+VWYLFSAGNEADVHGIYF
> Sbjct: 596 THAPDQVDKEDEDFQESNKMHSMNGFMYGNQSWPHMCLGESIVWYLFSAGNEADVHGIYF 655
>
> Query: 661 SGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRR 720
> SGNTYL +GE RDTANLFP SLTL M PDT+GTF+VECLTTDHYTGGMKQKYTVNQC+R
> Sbjct: 656 SGNTYLCKGEERDTANLFPHKSLTLLMNPDTKGTFDVECLTTDHYTGGMKQKYTVNQCQR 715
>
> Query: 721 QSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYK 780
> Q ED T YLGERTYY+ AVEVEWDYSP R WEKELHHLQEQNVSN FLDK EF+IGSKYK
> Sbjct: 716 QFEDFTVYLGERTYYVDAVEVEWDYSPSRAWEKELHHLQEQNVSNVFLDKEEFFIGSKYK 775
>
> Query: 781 KVVYRQYTDSTFRVPVERKAEE-EHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGV 839
> KVVYRQ+TDS+FR V+R+AEE EHLGILGP +HA+VGDKVK++FKNMATRPYSIHAHGV
> Sbjct: 776 KVVYRQFTDSSFREQVKRRAEEDEHLGILGPPIHANVGDKVKVVFKNMATRPYSIHAHGV 835
>
> Query: 840 QTESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIV 899
> +TESSTV PTLPGE TY W+IPERSGAG EDSACIPWAYYSTVD+VKDLYSGLIGPLIV
> Sbjct: 836 KTESSTVVPTLPGEVATYTWQIPERSGAGREDSACIPWAYYSTVDRVKDLYSGLIGPLIV 895
>
> Query: 900 CRRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMH 959
> CR+ Y+KVF+P++K+EF LLFLVFDENESWYLDDNIKTYS+HPEKVNKD+EEF+ESNKMH
> Sbjct: 896 CRKSYVKVFSPKKKMEFFLLFLVFDENESWYLDDNIKTYSEHPEKVNKDNEEFLESNKMH 955
>
> Query: 960 AINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIF 1019
> AING+MFGNLQGLTMHV DEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFD+F
> Sbjct: 956 AINGKMFGNLQGLTMHVKDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDLF 1015
>
> Query: 1020 PGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQ-NEDTKSG 1065
> PGTYQTLEMFP+TPG WLLHCHVTDH+HAGM TTYTVL ++TKSG
> Sbjct: 1016 PGTYQTLEMFPQTPGTWLLHCHVTDHVHAGMATTYTVLPVEQETKSG 1062
> </PRE>
>
>
> <PRE>
> ><a name = 2506226></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02506226&dopt=GenPept" >sp|P13635|CERU_RAT</a> CERULOPLASMIN PRECURSOR (FERROXIDASE)
> Length = 1059
>
> Score = 1851 bits (4794), Expect = 0.0
> Identities = 874/1065 (82%), Positives = 953/1065 (89%), Gaps = 6/1065 (0%)
>
> Query: 1 MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGP 60
> MK L+L LFL S+ AW +EKHYYIGI E WDYAS EK+LISVDTE SN YL+NGP
> Sbjct: 1 MKFLLLSALLFLHSSLAWTREKHYYIGITEAVWDYASGSEEKELISVDTEQSNFYLRNGP 60
>
> Query: 61 DRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFH 120
> DRIGR YKKALY +YTD TF TI+KP WLGFLGP+IKAE GDKV VH+KN ASRPYTFH
> Sbjct: 61 DRIGRKYKKALYSEYTDGTFTKTIDKPAWLGFLGPVIKAEVGDKVSVHVKNFASRPYTFH 120
>
> Query: 121 SHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH 180
> +HG+TY K +EGAIYPDNTTDFQRADDK++PG+QY Y+L A E SPGEGD NCVTRIYH
> Sbjct: 121 AHGVTYTKANEGAIYPDNTTDFQRADDKLFPGQQYLYVLRANEP-SPGEGDSNCVTRIYH 179
>
> Query: 181 SHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC 240
> SH+DAPKDIASGLIGPLI+CKK SL KEKE++ID+EFV+MFSVVDEN SWYLEDNIKT+C
> Sbjct: 180 SHVDAPKDIASGLIGPLILCKKGSLHKEKEENIDQEFVLMFSVVDENLSWYLEDNIKTFC 239
>
> Query: 241 SEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFH 300
> SEPEKVDKDNEDFQESNRMYS+NGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVH+ FH
> Sbjct: 240 SEPEKVDKDNEDFQESNRMYSINGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHSELFH 299
>
> Query: 301 GQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKS 360
> GQALT+KNY D INLFPATL D MVAQNPG WMLSCQNLNHLKAGLQAFFQV++CNK
> Sbjct: 300 GQALTSKNYHTDIINLFPATLIDVSMVAQNPGVWMLSCQNLNHLKAGLQAFFQVRDCNKP 359
>
> Query: 361 SSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSY 420
> S D+I+ +HVRHYYIAAEE IW+YAPSG D FT EN T+ GSDS VFFEQG TRIGGSY
> Sbjct: 360 SPDDDIQDRHVRHYYIAAEETIWDYAPSGTDTFTGENFTSLGSDSRVFFEQGATRIGGSY 419
>
> Query: 421 KKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGV 480
> KKLVYREYTD SFTNRKERGP+EEHLGILGPVIWAEVGD IRVTFHNKG +PLSI+P+GV
> Sbjct: 420 KKLVYREYTDDSFTNRKERGPDEEHLGILGPVIWAEVGDIIRVTFHNKGQFPLSIQPMGV 479
>
> Query: 481 RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYY 540
> RF K NEGTYY P+ + ASHVAP ETFTYEWTVPKE+GPT ADPVCL+KMYY
> Sbjct: 480 RFTKENEGTYYGPDGRSSKQ-----ASHVAPKETFTYEWTVPKEMGPTYADPVCLSKMYY 534
>
> Query: 541 SAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMF 600
> S VD TKDIFTGLIGPMKICKKGSL A+GRQKDVDKEFYLF TVFDENESLLL+DNIRMF
> Sbjct: 535 SGVDLTKDIFTGLIGPMKICKKGSLLADGRQKDVDKEFYLFATVFDENESLLLDDNIRMF 594
>
> Query: 601 TTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYF 660
> TTAP+ VDKEDEDFQESNKMHSMNGFMYGN PGL MC G+S+VWYLFSAGNEADVHGIYF
> Sbjct: 595 TTAPENVDKEDEDFQESNKMHSMNGFMYGNLPGLNMCLGESIVWYLFSAGNEADVHGIYF 654
>
> Query: 661 SGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRR 720
> SGNTYL +GERRDTANLFP SLTL M PDTEG+F+VECLTTDHYTGGMKQKYTVNQC+
> Sbjct: 655 SGNTYLSKGERRDTANLFPHKSLTLLMTPDTEGSFDVECLTTDHYTGGMKQKYTVNQCKG 714
>
> Query: 721 QSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYK 780
> Q ED T Y GERTYYIAAVEVEWDYSP R+WE ELHHLQEQNVSNAFLDK EF+IGSKYK
> Sbjct: 715 QFEDVTLYQGERTYYIAAVEVEWDYSPSRDWEMELHHLQEQNVSNAFLDKEEFFIGSKYK 774
>
> Query: 781 KVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ 840
> KVVYR++TDSTFR V+R+AEEEHLG+LGP +HADVG KVK++FKNMATRPYSIHAHGV+
> Sbjct: 775 KVVYREFTDSTFREQVKRRAEEEHLGMLGPLIHADVGAKVKVVFKNMATRPYSIHAHGVK 834
>
> Query: 841 TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVC 900
> T+SSTV PTLPGE TY+W+IPERSGAGTEDS CIPWAYYSTVD+VKDLYSGLIGPLIVC
> Sbjct: 835 TKSSTVAPTLPGEVRTYIWQIPERSGAGTEDSPCIPWAYYSTVDRVKDLYSGLIGPLIVC 894
>
> Query: 901 RRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHA 960
> R+ Y+KVFNP++K+EF+LLFLVFDENESWYLDDNI TY DHPEK NKD+EEFIESNKMHA
> Sbjct: 895 RKSYVKVFNPKKKMEFSLLFLVFDENESWYLDDNINTYPDHPEKDNKDNEEFIESNKMHA 954
>
> Query: 961 INGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFP 1020
> ING+MFGNLQGLTMHVGDEVNWY+M MGNEIDLHTVHFHGHSFQYKHRG++SSDVFD FP
> Sbjct: 955 INGKMFGNLQGLTMHVGDEVNWYVMAMGNEIDLHTVHFHGHSFQYKHRGIHSSDVFDFFP 1014
>
> Query: 1021 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKSG 1065
> GTYQTLEMFP+TPG WLLHCHVTDHIHAGM TTYTVL N++TKSG
> Sbjct: 1015 GTYQTLEMFPQTPGTWLLHCHVTDHIHAGMVTTYTVLPNQETKSG 1059
> </PRE>
>
>
> <PRE>
> ><a name = 119767></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00119767&dopt=GenPept" >sp|P00451|FA8_HUMAN</a> Coagulation factor VIII precursor (Procoagulant component)
> (Antihemophilic factor) (AHF)
> Length = 2351
>
> Score = 426 bits (1096), Expect = e-119
> Identities = 261/766 (34%), Positives = 391/766 (50%), Gaps = 81/766 (10%)
>
> Query: 6 LGIFLFLCSTP-AWAKEKHYYIGIIETTWDY-ASDHGEKKLISVDTEHSNIYLQNGPDRI 63
> L FLC ++ + YY+G +E +WDY SD GE + VD ++ P
> Sbjct: 5 LSTCFFLCLLRFCFSATRRYYLGAVELSWDYMQSDLGE---LPVDARFPPRVPKSFPFNT 61
>
> Query: 64 GRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHG 123
> +YKK L++++TD F +P W+G LGP I+AE D V + LKN+AS P + H+ G
> Sbjct: 62 SVVYKKTLFVEFTDHLFNIAKPRPPWMGLLGPTIQAEVYDTVVITLKNMASHPVSLHAVG 121
>
> Query: 124 ITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHI 183
> ++Y+K EGA Y D T+ ++ DDKV+PG +TY+ +E P D C+T Y SH+
> Sbjct: 122 VSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHV 181
>
> Query: 184 DAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEP 243
> D KD+ SGLIG L++C++ SL KEK + + +F+++F+V DE SW+ E
> Sbjct: 182 DLVKDLNSGLIGALLVCREGSLAKEKTQTL-HKFILLFAVFDEGKSWHSE------TKNS 234
>
> Query: 244 EKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQA 303
> D+D + +M++VNGY SLPGL C V W++ GMG +VH+ F G
> Sbjct: 235 LMQDRDAASARAWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHT 294
>
> Query: 304 LTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQEC------ 357
> +N+R ++ + P T A + + G+++L C +H G++A+ +V C
> Sbjct: 295 FLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQL 354
>
> Query: 358 ---NKSSSKD------------------------NIRGKHVRH-----YYIAAEEIIWNY 385
> N ++D IR +H +YIAAEE W+Y
> Sbjct: 355 RMKNNEEAEDYDDDLTDSEMDVVRFDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWDY 414
>
> Query: 386 APSGIDIFTKENLTAPGSDS--AVFFEQGTTRIGGSYKKLVYREYTDASFTNRKERGPEE 443
> AP + AP S + + G RIG YKK+ + YTD +F K R +
> Sbjct: 415 APL---------VLAPDDRSYKSQYLNNGPQRIGRKYKKVRFMAYTDETF---KTREAIQ 462
>
> Query: 444 EHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVP 503
> GILGP+++ EVGDT+ + F N+ + P +I P G+ T P Y SR +P
> Sbjct: 463 HESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGI--------TDVRPLY---SRRLP 511
>
> Query: 504 PSASH-----VAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMK 558
> H + P E F Y+WTV E GPT +DP CL + Y S V+ +D+ +GLIGP+
> Sbjct: 512 KGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLL 571
>
> Query: 559 ICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESN 618
> IC K S+ G Q DK + +VFDEN S L +NI+ F P V ED +FQ SN
> Sbjct: 572 ICYKESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQASN 631
>
> Query: 619 KMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLF 678
> MHS+NG+++ + L++C + WY+ S G + D ++FSG T+ + DT LF
> Sbjct: 632 IMHSINGYVFDSLQ-LSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLF 690
>
> Query: 679 PQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSED 724
> P + T+ M + G + + C +D GM V+ C + + D
> Sbjct: 691 PFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVSSCDKNTGD 736
> </PRE>
>
>
> <PRE>
>
> Score = 369 bits (948), Expect = e-101
> Identities = 241/736 (32%), Positives = 367/736 (49%), Gaps = 93/736 (12%)
>
> Query: 372 RHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDA 431
> R YY+ A E+ W+Y S + + P + F YKK ++ E+TD
> Sbjct: 22 RRYYLGAVELSWDYMQSDLGELPVDARFPPRVPKSFPFNTSVV-----YKKTLFVEFTDH 76
>
> Query: 432 SFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYY 491
> F K R P +G+LGP I AEV DT+ +T N ++P+S+ +GV + K +EG
> Sbjct: 77 LFNIAKPRPP---WMGLLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGA-- 131
>
> Query: 492 SPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFT 551
> Y+ Q+ V P + TY W V KE GP +DP+CL Y S VD KD+ +
> Sbjct: 132 --EYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNS 189
>
> Query: 552 GLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKED 611
> GLIG + +C++GSL A + + + K LF VFDE +S E + D++
> Sbjct: 190 GLIGALLVCREGSL-AKEKTQTLHKFILLF-AVFDEGKSWHSETKNSLMQ------DRDA 241
>
> Query: 612 EDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGER 671
> + KMH++NG++ + PGL C SV W++ G +VH I+ G+T+L R R
> Sbjct: 242 ASARAWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHR 301
>
> Query: 672 RDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQC-------RRQSED 724
> + + + P T LT G F + C + H GM+ V+ C + +E+
> Sbjct: 302 QASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNEE 361
>
> Query: 725 STFYLGERT--------------------------------YYIAAVEVEWDYSPQREWE 752
> + Y + T +YIAA E +WDY+P
> Sbjct: 362 AEDYDDDLTDSEMDVVRFDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWDYAPL---- 417
>
> Query: 753 KELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQL 812
> + +++ + +L+ G IG KYKKV + YTD TF+ R+A + GILGP L
> Sbjct: 418 --VLAPDDRSYKSQYLNNGPQRIGRKYKKVRFMAYTDETFKT---REAIQHESGILGPLL 472
>
> Query: 813 HADVGDKVKIIFKNMATRPYSIHAHGVQTESSTVT-------------PTLPGETLTYVW 859
> + +VGD + IIFKN A+RPY+I+ HG+ + P LPGE Y W
> Sbjct: 473 YGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKW 532
>
> Query: 860 KIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYL-----KVFNPRRKL 914
> + G D C+ Y S V+ +DL SGLIGPL++C + + ++ + +R +
> Sbjct: 533 TVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSDKRNV 592
>
> Query: 915 EFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTM 974
> +LF VFDEN SWYL +NI+ + +P V +D EF SN MH+ING +F +LQ L++
> Sbjct: 593 ---ILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQASNIMHSINGYVFDSLQ-LSV 648
>
> Query: 975 HVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPG 1034
> + + WY++ +G + D +V F G++F KH+ VY D +FP + +T+ M PG
> Sbjct: 649 CLHEVAYWYILSIGAQTDFLSVFFSGYTF--KHKMVY-EDTLTLFPFSGETVFMSMENPG 705
>
> Query: 1035 IWLLHCHVTDHIHAGM 1050
> +W+L CH +D + GM
> Sbjct: 706 LWILGCHNSDFRNRGM 721
> </PRE>
>
>
> <PRE>
>
> Score = 248 bits (632), Expect = 5e-65
> Identities = 132/339 (38%), Positives = 188/339 (54%), Gaps = 8/339 (2%)
>
> Query: 24 YYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTT 83
> +YI E WDYA L D + + YL NGP RIGR YKK ++ YTDETF+T
> Sbjct: 403 HYIAAEEEDWDYAP----LVLAPDDRSYKSQYLNNGPQRIGRKYKKVRFMAYTDETFKTR 458
>
> Query: 84 IEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQ 143
> G LGP++ E GD + + KN ASRPY + HGIT + P +
> Sbjct: 459 EAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLK 518
>
> Query: 144 RADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKD 203
> D + PGE + Y T E P + D C+TR Y S ++ +D+ASGLIGPL+IC K+
> Sbjct: 519 --DFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKE 576
>
> Query: 204 SLDKEKEKHI-DREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMYSV 262
> S+D+ + + D+ V++FSV DEN SWYL +NI+ + P V ++ +FQ SN M+S+
> Sbjct: 577 SVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQASNIMHSI 636
>
> Query: 263 NGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLF 322
> NGY F SL LS+C + WY+ +G + D + FF G +K DT+ LFP +
> Sbjct: 637 NGYVFDSLQ-LSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGE 695
>
> Query: 323 DAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSS 361
> +M +NPG W+L C N + G+ A +V C+K++
> Sbjct: 696 TVFMSMENPGLWILGCHNSDFRNRGMTALLKVSSCDKNT 734
> </PRE>
>
>
> <PRE>
>
> Score = 243 bits (619), Expect = 2e-63
> Identities = 125/360 (34%), Positives = 193/360 (52%), Gaps = 22/360 (6%)
>
> Query: 710 KQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLD 769
> K+ + + +F R Y+IAAVE WDY H L+ + S +
> Sbjct: 1693 KEDFDIYDEDENQSPRSFQKKTRHYFIAAVERLWDYG----MSSSPHVLRNRAQSGSV-- 1746
>
> Query: 770 KGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT 829
> ++KKVV++++TD +F P+ R EHLG+LGP + A+V D + + F+N A+
> Sbjct: 1747 -------PQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFRNQAS 1799
>
> Query: 830 RPYSIHAHGVQTESST---VTP----TLPGETLTYVWKIPERSGAGTEDSACIPWAYYST 882
> RPYS ++ + E P P ET TY WK+ ++ C WAY+S
> Sbjct: 1800 RPYSFYSSLISYEEDQRQGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYFSD 1859
>
> Query: 883 VDQVKDLYSGLIGPLIVCRRPYLKVFNPRRKL--EFALLFLVFDENESWYLDDNIKTYSD 940
> VD KD++SGLIGPL+VC L + R+ EFAL F +FDE +SWY +N++
> Sbjct: 1860 VDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTENMERNCR 1919
>
> Query: 941 HPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHG 1000
> P + +D F E+ + HAING + L GL M + WYL+ MG+ ++H++HF G
> Sbjct: 1920 APCNIQMEDPTFKENYRFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSG 1979
>
> Query: 1001 HSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNE 1060
> H F + + Y +++++PG ++T+EM P GIW + C + +H+HAGM T + V N+
> Sbjct: 1980 HVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNK 2039
> </PRE>
>
>
> <PRE>
>
> Score = 211 bits (537), Expect = 6e-54
> Identities = 126/357 (35%), Positives = 185/357 (51%), Gaps = 33/357 (9%)
>
> Query: 369 KHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREY 428
> K RHY+IAA E +W+Y S S V + + +KK+V++E+
> Sbjct: 1712 KKTRHYFIAAVERLWDYGMS--------------SSPHVLRNRAQSGSVPQFKKVVFQEF 1757
>
> Query: 429 TDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEG 488
> TD SFT RG EHLG+LGP I AEV D I VTF N+ + P S + + ++
> Sbjct: 1758 TDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFRNQASRPYSFYSSLISYEED--- 1814
>
> Query: 489 TYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKD 548
> Q + P + V P ET TY W V + PT + C A Y+S VD KD
> Sbjct: 1815 ---------QRQGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYFSDVDLEKD 1865
>
> Query: 549 IFTGLIGPMKICKKGSLH-ANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQV 607
> + +GLIGP+ +C +L+ A+GRQ V +EF LF T+FDE +S +N+ AP +
> Sbjct: 1866 VHSGLIGPLLVCHTNTLNPAHGRQVTV-QEFALFFTIFDETKSWYFTENMERNCRAPCNI 1924
>
> Query: 608 DKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLW 667
> ED F+E+ + H++NG++ PGL M + + WYL S G+ ++H I+FSG+ +
> Sbjct: 1925 QMEDPTFKENYRFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTV 1984
>
> Query: 668 RGE---RRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTV--NQCR 719
> R + + NL+P T+ M P G + VECL +H GM + V N+C+
> Sbjct: 1985 RKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNKCQ 2041
> </PRE>
>
>
> <PRE>
>
> Score = 197 bits (501), Expect = 8e-50
> Identities = 112/377 (29%), Positives = 183/377 (47%), Gaps = 31/377 (8%)
>
> Query: 20 KEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRL--YKKALYLQYTD 77
> K +HY+I +E WDY S+ ++ + G + +KK ++ ++TD
> Sbjct: 1713 KTRHYFIAAVERLWDYGMS-------------SSPHVLRNRAQSGSVPQFKKVVFQEFTD 1759
>
> Query: 78 ETFRTTI---EKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAI 134
> +F + E LG LGP I+AE D + V +N ASRPY+F+S I+Y ++
> Sbjct: 1760 GSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFRNQASRPYSFYSSLISYEEDQRQGA 1819
>
> Query: 135 YPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLI 194
> P V P E TY +P + + +C Y S +D KD+ SGLI
> Sbjct: 1820 EPRKNF--------VKPNETKTYFWKVQHHMAPTKDEFDCKAWAYFSDVDLEKDVHSGLI 1871
>
> Query: 195 GPLIICKKDSLDKEKEKHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDF 253
> GPL++C ++L+ + + +EF + F++ DE SWY +N++ C P + ++ F
> Sbjct: 1872 GPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTENMERNCRAPCNIQMEDPTF 1931
>
> Query: 254 QESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT---NKNYR 310
> +E+ R +++NGY +LPGL M + R++WYL MG+ ++H+ F G T + Y+
> Sbjct: 1932 KENYRFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEYK 1991
>
> Query: 311 IDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKH 370
> + NL+P M+ G W + C HL AG+ F V NK + + H
> Sbjct: 1992 MALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYS-NKCQTPLGMASGH 2050
>
> Query: 371 VRHYYIAAEEIIWNYAP 387
> +R + I A +AP
> Sbjct: 2051 IRDFQITASGQYGQWAP 2067
> </PRE>
>
>
> <PRE>
>
> Score = 171 bits (432), Expect = 8e-42
> Identities = 110/335 (32%), Positives = 161/335 (47%), Gaps = 31/335 (9%)
>
> Query: 732 RTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDST 791
> R YY+ AVE+ WDY E + V +F F YKK ++ ++TD
> Sbjct: 22 RRYYLGAVELSWDYMQSDLGELPVDARFPPRVPKSF----PFNTSVVYKKTLFVEFTDHL 77
>
> Query: 792 FRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTV----- 846
> F + K +G+LGP + A+V D V I KNMA+ P S+HA GV ++
> Sbjct: 78 FNIA---KPRPPWMGLLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYD 134
>
> Query: 847 ----------TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGP 896
> PG + TYVW++ + +G D C+ ++Y S VD VKDL SGLIG
> Sbjct: 135 DQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGA 194
>
> Query: 897 LIVCRRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESN 956
> L+VCR L + +F LLF VFDE +SW+ + D +D
> Sbjct: 195 LLVCREGSLAKEKTQTLHKFILLFAVFDEGKSWHSETKNSLMQD------RDAASARAWP 248
>
> Query: 957 KMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVF 1016
> KMH +NG + +L GL V W+++GMG ++H++ GH+F ++ S
> Sbjct: 249 KMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQAS---L 305
>
> Query: 1017 DIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGME 1051
> +I P T+ T + G +LL CH++ H H GME
> Sbjct: 306 EISPITFLTAQTLLMDLGQFLLFCHISSHQHDGME 340
> </PRE>
>
>
> <PRE>
> ><a name = 544272></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00544272&dopt=GenPept" >sp|Q06194|FA8_MOUSE</a> Coagulation factor VIII precursor (Procoagulant component)
> Length = 2319
>
> Score = 417 bits (1072), Expect = e-116
> Identities = 250/769 (32%), Positives = 395/769 (50%), Gaps = 78/769 (10%)
>
> Query: 1 MKILILGIFLFLCSTPAWAKEKHYYIGIIETTWDYASDHGEKKLISV---DTEHSNIYLQ 57
> M+I + F + + YY+G +E +W+Y + L+SV D+
> Sbjct: 1 MQIALFACFFLSLFNFCSSAIRRYYLGAVELSWNYI----QSDLLSVLHTDSRFLPRMST 56
>
> Query: 58 NGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPY 117
> + P +YKK ++++Y D+ F +P W+G LGP I E D V + LKN+AS P
> Sbjct: 57 SFPFNTSIMYKKTVFVEYKDQLFNIAKPRPPWMGLLGPTIWTEVHDTVVITLKNMASHPV 116
>
> Query: 118 TFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTR 177
> + H+ G++Y+K EG Y D T+ ++ DDKV+PGE +TY+ +E P D C+T
> Sbjct: 117 SLHAVGVSYWKASEGDEYEDQTSQMEKEDDKVFPGESHTYVWQVLKENGPMASDPPCLTY 176
>
> Query: 178 IYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIK 237
> Y SH+D KD+ SGLIG L++CK+ SL KE+ + + +FV++F+V DE SW+ E N
> Sbjct: 177 SYMSHVDLVKDLNSGLIGALLVCKEGSLSKERTQML-YQFVLLFAVFDEGKSWHSETN-- 233
>
> Query: 238 TYCSEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAA 297
> + D+ ++ +M++VNGY SLPGL C V W++ GMG ++H+
> Sbjct: 234 ----DSYTQSMDSASARDWPKMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEIHSI 289
>
> Query: 298 FFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQEC 357
> F G +N+R ++ + P T A + + G+++L C +H G++A+ +V C
> Sbjct: 290 FLEGHTFFVRNHRQASLEISPITFLTAQTLLIDLGQFLLFCHISSHKHDGMEAYVKVDSC 349
>
> Query: 358 NKSS---SKDN-----------------------------IRGKHVRH-----YYIAAEE 380
> + S K+N IR ++ +YI+AEE
> Sbjct: 350 PEESQWQKKNNNEEMEDYDDDLYSEMDMFTLDYDSSPFIQIRSVAKKYPKTWIHYISAEE 409
>
> Query: 381 IIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDASFTNRKERG 440
> W+YAPS + T +N GS + + G RIG YKK+ + YTD +F K R
> Sbjct: 410 EDWDYAPS---VPTSDN----GSYKSQYLSNGPHRIGRKYKKVRFIAYTDETF---KTRE 459
>
> Query: 441 PEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYYSPNYNPQSR 500
> + G+LGP+++ EVGDT+ + F N+ + P +I P G+ T SP + +R
> Sbjct: 460 TIQHESGLLGPLLYGEVGDTLLIIFKNQASRPYNIYPHGI--------TDVSPLH---AR 508
>
> Query: 501 SVPPSASHVA-----PTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIG 555
> +P HV P E F Y+WTV E GPT +DP CL + Y S ++P +D+ +GLIG
> Sbjct: 509 RLPRGIKHVKDLPIHPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFINPERDLASGLIG 568
>
> Query: 556 PMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQ 615
> P+ IC K S+ G Q DK + ++FDEN+S + +N++ F + +D FQ
> Sbjct: 569 PLLICYKESVDQRGNQMMSDKRNVILFSIFDENQSWYITENMQRFLPNAAKTQPQDPGFQ 628
>
> Query: 616 ESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTA 675
> SN MHS+NG+++ + LT+C + W++ S G + D I+FSG T+ + DT
> Sbjct: 629 ASNIMHSINGYVFDSLE-LTVCLHEVAYWHILSVGAQTDFLSIFFSGYTFKHKMVYEDTL 687
>
> Query: 676 NLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSED 724
> LFP + T+ M + G + + C +D GM V+ C + + D
> Sbjct: 688 TLFPFSGETVFMSMENPGLWVLGCHNSDFRKRGMTALLKVSSCDKSTSD 736
> </PRE>
>
>
> <PRE>
>
> Score = 366 bits (940), Expect = e-100
> Identities = 236/743 (31%), Positives = 363/743 (48%), Gaps = 93/743 (12%)
>
> Query: 365 NIRGKHVRHYYIAAEEIIWNYAPSGI-DIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKL 423
> N +R YY+ A E+ WNY S + + ++ P ++ F YKK
> Sbjct: 15 NFCSSAIRRYYLGAVELSWNYIQSDLLSVLHTDSRFLPRMSTSFPFNTSIM-----YKKT 69
>
> Query: 424 VYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFN 483
> V+ EY D F K R P +G+LGP IW EV DT+ +T N ++P+S+ +GV +
> Sbjct: 70 VFVEYKDQLFNIAKPRPP---WMGLLGPTIWTEVHDTVVITLKNMASHPVSLHAVGVSYW 126
>
> Query: 484 KNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAV 543
> K +EG Y Q+ + V P E+ TY W V KE GP +DP CL Y S V
> Sbjct: 127 KASEGD----EYEDQTSQMEKEDDKVFPGESHTYVWQVLKENGPMASDPPCLTYSYMSHV 182
>
> Query: 544 DPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTA 603
> D KD+ +GLIG + +CK+GSL Q + +F L VFDE +S E N +T +
> Sbjct: 183 DLVKDLNSGLIGALLVCKEGSLSKERTQ--MLYQFVLLFAVFDEGKSWHSETN-DSYTQS 239
>
> Query: 604 PDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGN 663
> D D KMH++NG++ + PGL C SV W++ G ++H I+ G+
> Sbjct: 240 MDSASARDWP-----KMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEIHSIFLEGH 294
>
> Query: 664 TYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSE 723
> T+ R R+ + + P T LT G F + C + H GM+ V+ C +S+
> Sbjct: 295 TFFVRNHRQASLEISPITFLTAQTLLIDLGQFLLFCHISSHKHDGMEAYVKVDSCPEESQ 354
>
> Query: 724 ----------------------------DSTFYLGERT----------YYIAAVEVEWDY 745
> DS+ ++ R+ +YI+A E +WDY
> Sbjct: 355 WQKKNNNEEMEDYDDDLYSEMDMFTLDYDSSPFIQIRSVAKKYPKTWIHYISAEEEDWDY 414
>
> Query: 746 SPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHL 805
> +P + + + +L G IG KYKKV + YTD TF+ R+ +
> Sbjct: 415 APS------VPTSDNGSYKSQYLSNGPHRIGRKYKKVRFIAYTDETFKT---RETIQHES 465
>
> Query: 806 GILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTVT-------------PTLPG 852
> G+LGP L+ +VGD + IIFKN A+RPY+I+ HG+ S P PG
> Sbjct: 466 GLLGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVSPLHARRLPRGIKHVKDLPIHPG 525
>
> Query: 853 ETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYL-----KV 907
> E Y W + G D C+ Y S ++ +DL SGLIGPL++C + + ++
> Sbjct: 526 EIFKYKWTVTVEDGPTKSDPRCLTRYYSSFINPERDLASGLIGPLLICYKESVDQRGNQM 585
>
> Query: 908 FNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFG 967
> + +R + +LF +FDEN+SWY+ +N++ + + K D F SN MH+ING +F
> Sbjct: 586 MSDKRNV---ILFSIFDENQSWYITENMQRFLPNAAKTQPQDPGFQASNIMHSINGYVFD 642
>
> Query: 968 NLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLE 1027
> +L+ LT+ + + W+++ +G + D ++ F G++F KH+ VY D +FP + +T+
> Sbjct: 643 SLE-LTVCLHEVAYWHILSVGAQTDFLSIFFSGYTF--KHKMVY-EDTLTLFPFSGETVF 698
>
> Query: 1028 MFPRTPGIWLLHCHVTDHIHAGM 1050
> M PG+W+L CH +D GM
> Sbjct: 699 MSMENPGLWVLGCHNSDFRKRGM 721
> </PRE>
>
>
> <PRE>
>
> Score = 242 bits (618), Expect = 2e-63
> Identities = 132/345 (38%), Positives = 189/345 (54%), Gaps = 18/345 (5%)
>
> Query: 24 YYIGIIETTWDYA-----SDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDE 78
> +YI E WDYA SD+G K + YL NGP RIGR YKK ++ YTDE
> Sbjct: 403 HYISAEEEDWDYAPSVPTSDNGSYK---------SQYLSNGPHRIGRKYKKVRFIAYTDE 453
>
> Query: 79 TFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDN 138
> TF+T G LGP++ E GD + + KN ASRPY + HGIT P
> Sbjct: 454 TFKTRETIQHESGLLGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVSPLHARRLPRG 513
>
> Query: 139 TTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLI 198
> + D ++PGE + Y T E P + D C+TR Y S I+ +D+ASGLIGPL+
> Sbjct: 514 IKHVK--DLPIHPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFINPERDLASGLIGPLL 571
>
> Query: 199 ICKKDSLDKEKEKHI-DREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESN 257
> IC K+S+D+ + + D+ V++FS+ DEN SWY+ +N++ + K + FQ SN
> Sbjct: 572 ICYKESVDQRGNQMMSDKRNVILFSIFDENQSWYITENMQRFLPNAAKTQPQDPGFQASN 631
>
> Query: 258 RMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLF 317
> M+S+NGY F SL L++C + W++ +G + D + FF G +K DT+ LF
> Sbjct: 632 IMHSINGYVFDSLE-LTVCLHEVAYWHILSVGAQTDFLSIFFSGYTFKHKMVYEDTLTLF 690
>
> Query: 318 PATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSS 362
> P + +M +NPG W+L C N + K G+ A +V C+KS+S
> Sbjct: 691 PFSGETVFMSMENPGLWVLGCHNSDFRKRGMTALLKVSSCDKSTS 735
> </PRE>
>
>
> <PRE>
>
> Score = 235 bits (599), Expect = 4e-61
> Identities = 122/343 (35%), Positives = 182/343 (52%), Gaps = 22/343 (6%)
>
> Query: 726 TFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYR 785
> +F R Y+IAAVE WDY + Q NV ++KKVV++
> Sbjct: 1679 SFQQKTRHYFIAAVERLWDYGMSTSHVLR-NRYQSDNVP-------------QFKKVVFQ 1724
>
> Query: 786 QYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGV------ 839
> ++TD +F P+ R EHLG+LGP + A+V D + + FKN A+RPYS ++ +
> Sbjct: 1725 EFTDGSFSQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFKNQASRPYSFYSSLISYKEDQ 1784
>
> Query: 840 QTESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIV 899
> + E P ET Y WK+ ++ C WAY+S VD +D++SGLIGPL++
> Sbjct: 1785 RGEEPRRNFVKPNETKIYFWKVQHHMAPTEDEFDCKAWAYFSDVDLERDMHSGLIGPLLI 1844
>
> Query: 900 CRRPYLKVFNPRRKL--EFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNK 957
> C L + R+ EFALLF +FDE +SWY +N+K P +D E+ +
> Sbjct: 1845 CHANTLNPAHGRQVSVQEFALLFTIFDETKSWYFTENVKRNCKTPCNFQMEDPTLKENYR 1904
>
> Query: 958 MHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFD 1017
> HAING + L GL M + WYL+ MGN ++ ++HF GH F + + Y V++
> Sbjct: 1905 FHAINGYVMDTLPGLVMAQDQRIRWYLLSMGNNENIQSIHFSGHVFTVRKKEEYKMAVYN 1964
>
> Query: 1018 IFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNE 1060
> ++PG ++TLEM P GIW + C + +H+ AGM T + V +
> Sbjct: 1965 LYPGVFETLEMIPSRAGIWRVECLIGEHLQAGMSTLFLVYSKQ 2007
> </PRE>
>
>
> <PRE>
>
> Score = 197 bits (502), Expect = 6e-50
> Identities = 125/356 (35%), Positives = 178/356 (49%), Gaps = 39/356 (10%)
>
> Query: 372 RHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDA 431
> RHY+IAA E +W+Y S + SD+ F KK+V++E+TD
> Sbjct: 1685 RHYFIAAVERLWDYGMSTSHVLRNRYQ----SDNVPQF-----------KKVVFQEFTDG 1729
>
> Query: 432 SFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYY 491
> SF+ RG EHLG+LGP I AEV D I VTF N+ + P S +Y
> Sbjct: 1730 SFSQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFKNQASRPYS---------------FY 1774
>
> Query: 492 SP--NYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDI 549
> S +Y R P + V P ET Y W V + PT + C A Y+S VD +D+
> Sbjct: 1775 SSLISYKEDQRGEEPRRNFVKPNETKIYFWKVQHHMAPTEDEFDCKAWAYFSDVDLERDM 1834
>
> Query: 550 FTGLIGPMKICKKGSLH-ANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVD 608
> +GLIGP+ IC +L+ A+GRQ V +EF L T+FDE +S +N++ P
> Sbjct: 1835 HSGLIGPLLICHANTLNPAHGRQVSV-QEFALLFTIFDETKSWYFTENVKRNCKTPCNFQ 1893
>
> Query: 609 KEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWR 668
> ED +E+ + H++NG++ PGL M + + WYL S GN ++ I+FSG+ + R
> Sbjct: 1894 MEDPTLKENYRFHAINGYVMDTLPGLVMAQDQRIRWYLLSMGNNENIQSIHFSGHVFTVR 1953
>
> Query: 669 GE---RRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTV--NQCR 719
> + + NL+P TL M P G + VECL +H GM + V QC+
> Sbjct: 1954 KKEEYKMAVYNLYPGVFETLEMIPSRAGIWRVECLIGEHLQAGMSTLFLVYSKQCQ 2009
> </PRE>
>
>
> <PRE>
>
> Score = 191 bits (485), Expect = 6e-48
> Identities = 107/344 (31%), Positives = 170/344 (49%), Gaps = 32/344 (9%)
>
> Query: 20 KEKHYYIGIIETTWDYASDHGEKKLISVDTEH--SNIYLQNGPDRIGRLYKKALYLQYTD 77
> K +HY+I +E WDY + T H N Y + + +KK ++ ++TD
> Sbjct: 1683 KTRHYFIAAVERLWDYG----------MSTSHVLRNRYQSDNVPQ----FKKVVFQEFTD 1728
>
> Query: 78 ETFRTTI---EKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAI 134
> +F + E LG LGP I+AE D + V KN ASRPY+F+S I+Y ++ G
> Sbjct: 1729 GSFSQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFKNQASRPYSFYSSLISYKEDQRGE- 1787
>
> Query: 135 YPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLI 194
> + + V P E Y +P E + +C Y S +D +D+ SGLI
> Sbjct: 1788 --------EPRRNFVKPNETKIYFWKVQHHMAPTEDEFDCKAWAYFSDVDLERDMHSGLI 1839
>
> Query: 195 GPLIICKKDSLDKEKEKHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDF 253
> GPL+IC ++L+ + + +EF ++F++ DE SWY +N+K C P ++
> Sbjct: 1840 GPLLICHANTLNPAHGRQVSVQEFALLFTIFDETKSWYFTENVKRNCKTPCNFQMEDPTL 1899
>
> Query: 254 QESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT---NKNYR 310
> +E+ R +++NGY +LPGL M + R++WYL MGN ++ + F G T + Y+
> Sbjct: 1900 KENYRFHAINGYVMDTLPGLVMAQDQRIRWYLLSMGNNENIQSIHFSGHVFTVRKKEEYK 1959
>
> Query: 311 IDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQV 354
> + NL+P M+ G W + C HL+AG+ F V
> Sbjct: 1960 MAVYNLYPGVFETLEMIPSRAGIWRVECLIGEHLQAGMSTLFLV 2003
> </PRE>
>
>
> <PRE>
>
> Score = 172 bits (436), Expect = 3e-42
> Identities = 113/337 (33%), Positives = 170/337 (49%), Gaps = 34/337 (10%)
>
> Query: 732 RTYYIAAVEVEWDYSPQREWEKELHHLQE--QNVSNAFLDKGEFYIGSKYKKVVYRQYTD 789
> R YY+ AVE+ W+Y Q + LH +S +F F YKK V+ +Y D
> Sbjct: 22 RRYYLGAVELSWNYI-QSDLLSVLHTDSRFLPRMSTSF----PFNTSIMYKKTVFVEYKD 76
>
> Query: 790 STFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGV---------- 839
> F + K +G+LGP + +V D V I KNMA+ P S+HA GV
> Sbjct: 77 QLFNIA---KPRPPWMGLLGPTIWTEVHDTVVITLKNMASHPVSLHAVGVSYWKASEGDE 133
>
> Query: 840 -QTESSTVTP----TLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLI 894
> + ++S + PGE+ TYVW++ + +G D C+ ++Y S VD VKDL SGLI
> Sbjct: 134 YEDQTSQMEKEDDKVFPGESHTYVWQVLKENGPMASDPPCLTYSYMSHVDLVKDLNSGLI 193
>
> Query: 895 GPLIVCRRPYLKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIE 954
> G L+VC+ L + +F LLF VFDE +SW+ + N +Y+ + + D
> Sbjct: 194 GALLVCKEGSLSKERTQMLYQFVLLFAVFDEGKSWHSETN-DSYTQSMDSASARDWP--- 249
>
> Query: 955 SNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSD 1014
> KMH +NG + +L GL V W+++GMG ++H++ GH+F ++ S
> Sbjct: 250 --KMHTVNGYVNRSLPGLIGCHRKSVYWHVIGMGTTPEIHSIFLEGHTFFVRNHRQAS-- 305
>
> Query: 1015 VFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGME 1051
> +I P T+ T + G +LL CH++ H H GME
> Sbjct: 306 -LEISPITFLTAQTLLIDLGQFLLFCHISSHKHDGME 341
> </PRE>
>
>
> <PRE>
> ><a name = 2506228></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02506228&dopt=GenPept" >sp|P12263|FA8_PIG</a> Coagulation factor VIII precursor (Procoagulant component)
> Length = 2133
>
> Score = 416 bits (1068), Expect = e-115
> Identities = 254/762 (33%), Positives = 392/762 (51%), Gaps = 69/762 (9%)
>
> Query: 4 LILGIFLFLCSTP-AWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDR 62
> L L +FLC P ++ + YY+G +E +WDY ++L VDT P
> Sbjct: 3 LELSTCVFLCLLPLGFSAIRRYYLGAVELSWDYRQSELLREL-HVDTRFPATAPGALPLG 61
>
> Query: 63 IGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSH 122
> LYKK +++++TD+ F +P W+G LGP I+AE D V V LKN+AS P + H+
> Sbjct: 62 PSVLYKKTVFVEFTDQLFSVARPRPPWMGLLGPTIQAEVYDTVVVTLKNMASHPVSLHAV 121
>
> Query: 123 GITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSH 182
> G++++K EGA Y D+T+ ++ DDKV PG+ TY+ +E P D C+T Y SH
> Sbjct: 122 GVSFWKSSEGAEYEDHTSQREKEDDKVLPGKSQTYVWQVLKENGPTASDPPCLTYSYLSH 181
>
> Query: 183 IDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIK-TYCS 241
> +D KD+ SGLIG L++C++ SL +E+ +++ EFV++F+V DE SW+ N T
> Sbjct: 182 VDLVKDLNSGLIGALLVCREGSLTRERTQNL-HEFVLLFAVFDEGKSWHSARNDSWTRAM 240
>
> Query: 242 EPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHG 301
> +P + M++VNGY SLPGL C + V W++ GMG +VH+ F G
> Sbjct: 241 DPAPA-------RAQPAMHTVNGYVNRSLPGLIGCHKKSVYWHVIGMGTSPEVHSIFLEG 293
>
> Query: 302 QALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQEC---- 357
> +++R ++ + P T A + G+++L C +H G++A +V+ C
> Sbjct: 294 HTFLVRHHRQASLEISPLTFLTAQTFLMDLGQFLLFCHISSHHHGGMEAHVRVESCAEEP 353
>
> Query: 358 ---NKSSSKDN-------------------------IRGKHVRH-----YYIAAEEIIWN 384
> K+ +++ IR +H +YI+AEE W+
> Sbjct: 354 QLRRKADEEEDYDDNLYDSDMDVVRLDGDDVSPFIQIRSVAKKHPKTWVHYISAEEEDWD 413
>
> Query: 385 YAPSGIDIFTKENLTAPGSDS--AVFFEQGTTRIGGSYKKLVYREYTDASFTNRKERGPE 442
> YAP+ + +P S +++ G RIG YKK + YTD +F RK E
> Sbjct: 414 YAPA---------VPSPSDRSYKSLYLNSGPQRIGRKYKKARFVAYTDVTFKTRKAIPYE 464
>
> Query: 443 EEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSV 502
> GILGP+++ EVGDT+ + F NK + P +I P G+ + + +
> Sbjct: 465 S---GILGPLLYGEVGDTLLIIFKNKASRPYNIYPHGITDVSALHPGRLLKGWK-HLKDM 520
>
> Query: 503 PPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKK 562
> P + P ETF Y+WTV E GPT +DP CL + Y S+++ KD+ +GLIGP+ IC K
> Sbjct: 521 P-----ILPGETFKYKWTVTVEDGPTKSDPRCLTRYYSSSINLEKDLASGLIGPLLICYK 575
>
> Query: 563 GSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHS 622
> S+ G Q DK + +VFDEN+S L +NI+ F PD + +D +FQ SN MHS
> Sbjct: 576 ESVDQRGNQMMSDKRNVILFSVFDENQSWYLAENIQRFLPNPDGLQPQDPEFQASNIMHS 635
>
> Query: 623 MNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQTS 682
> +NG+++ + L++C + WY+ S G + D ++FSG T+ + DT LFP +
> Sbjct: 636 INGYVFDSLQ-LSVCLHEVAYWYILSVGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSG 694
>
> Query: 683 LTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSED 724
> T+ M + G + + C +D GM V C R D
> Sbjct: 695 ETVFMSMENPGLWVLGCHNSDLRNRGMTALLKVYSCDRDIGD 736
> </PRE>
>
>
> <PRE>
>
> Score = 379 bits (972), Expect = e-104
> Identities = 251/742 (33%), Positives = 379/742 (50%), Gaps = 103/742 (13%)
>
> Query: 371 VRHYYIAAEEIIWNYAPSGI----DIFTKENLTAPGSDSAVFFEQGTTRIGGS--YKKLV 424
> +R YY+ A E+ W+Y S + + T+ TAPG+ +G S YKK V
> Sbjct: 21 IRRYYLGAVELSWDYRQSELLRELHVDTRFPATAPGA----------LPLGPSVLYKKTV 70
>
> Query: 425 YREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNK 484
> + E+TD F+ + R P +G+LGP I AEV DT+ VT N ++P+S+ +GV F K
> Sbjct: 71 FVEFTDQLFSVARPRPP---WMGLLGPTIQAEVYDTVVVTLKNMASHPVSLHAVGVSFWK 127
>
> Query: 485 NNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVD 544
> ++EG Y + + + + V P ++ TY W V KE GPT +DP CL Y S VD
> Sbjct: 128 SSEGAEYEDHTSQREKE----DDKVLPGKSQTYVWQVLKENGPTASDPPCLTYSYLSHVD 183
>
> Query: 545 PTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAP 604
> KD+ +GLIG + +C++GSL Q EF L VFDE +S N +T A
> Sbjct: 184 LVKDLNSGLIGALLVCREGSLTRERTQNL--HEFVLLFAVFDEGKSWHSARN-DSWTRAM 240
>
> Query: 605 DQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNT 664
> D + MH++NG++ + PGL C SV W++ G +VH I+ G+T
> Sbjct: 241 DPAPARAQP-----AMHTVNGYVNRSLPGLIGCHKKSVYWHVIGMGTSPEVHSIFLEGHT 295
>
> Query: 665 YLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQC------ 718
> +L R R+ + + P T LT + G F + C + H+ GGM+ V C
> Sbjct: 296 FLVRHHRQASLEISPLTFLTAQTFLMDLGQFLLFCHISSHHHGGMEAHVRVESCAEEPQL 355
>
> Query: 719 RRQSE-----DSTFYLGER---------------------------TYYIAAVEVEWDYS 746
> RR+++ D Y + +YI+A E +WDY+
> Sbjct: 356 RRKADEEEDYDDNLYDSDMDVVRLDGDDVSPFIQIRSVAKKHPKTWVHYISAEEEDWDYA 415
>
> Query: 747 PQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLG 806
> P + +++ + +L+ G IG KYKK + YTD TF+ RKA G
> Sbjct: 416 PA------VPSPSDRSYKSLYLNSGPQRIGRKYKKARFVAYTDVTFKT---RKAIPYESG 466
>
> Query: 807 ILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTVT-------------PTLPGE 853
> ILGP L+ +VGD + IIFKN A+RPY+I+ HG+ S+ P LPGE
> Sbjct: 467 ILGPLLYGEVGDTLLIIFKNKASRPYNIYPHGITDVSALHPGRLLKGWKHLKDMPILPGE 526
>
> Query: 854 TLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYL-----KVF 908
> T Y W + G D C+ Y S+++ KDL SGLIGPL++C + + ++
> Sbjct: 527 TFKYKWTVTVEDGPTKSDPRCLTRYYSSSINLEKDLASGLIGPLLICYKESVDQRGNQMM 586
>
> Query: 909 NPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGN 968
> + +R + +LF VFDEN+SWYL +NI+ + +P+ + D EF SN MH+ING +F +
> Sbjct: 587 SDKRNV---ILFSVFDENQSWYLAENIQRFLPNPDGLQPQDPEFQASNIMHSINGYVFDS 643
>
> Query: 969 LQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEM 1028
> LQ L++ + + WY++ +G + D +V F G++F KH+ VY D +FP + +T+ M
> Sbjct: 644 LQ-LSVCLHEVAYWYILSVGAQTDFLSVFFSGYTF--KHKMVY-EDTLTLFPFSGETVFM 699
>
> Query: 1029 FPRTPGIWLLHCHVTDHIHAGM 1050
> PG+W+L CH +D + GM
> Sbjct: 700 SMENPGLWVLGCHNSDLRNRGM 721
> </PRE>
>
>
> <PRE>
>
> Score = 247 bits (630), Expect = 9e-65
> Identities = 132/339 (38%), Positives = 189/339 (54%), Gaps = 12/339 (3%)
>
> Query: 24 YYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTT 83
> +YI E WDYA D + ++YL +GP RIGR YKKA ++ YTD TF+T
> Sbjct: 403 HYISAEEEDWDYAPAVPSPS----DRSYKSLYLNSGPQRIGRKYKKARFVAYTDVTFKTR 458
>
> Query: 84 IEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQ 143
> P G LGP++ E GD + + KN ASRPY + HGIT A++P
> Sbjct: 459 KAIPYESGILGPLLYGEVGDTLLIIFKNKASRPYNIYPHGIT----DVSALHPGRLLKGW 514
>
> Query: 144 R--ADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICK 201
> + D + PGE + Y T E P + D C+TR Y S I+ KD+ASGLIGPL+IC
> Sbjct: 515 KHLKDMPILPGETFKYKWTVTVEDGPTKSDPRCLTRYYSSSINLEKDLASGLIGPLLICY 574
>
> Query: 202 KDSLDKEKEKHI-DREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMY 260
> K+S+D+ + + D+ V++FSV DEN SWYL +NI+ + P+ + + +FQ SN M+
> Sbjct: 575 KESVDQRGNQMMSDKRNVILFSVFDENQSWYLAENIQRFLPNPDGLQPQDPEFQASNIMH 634
>
> Query: 261 SVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPAT 320
> S+NGY F SL LS+C + WY+ +G + D + FF G +K DT+ LFP +
> Sbjct: 635 SINGYVFDSLQ-LSVCLHEVAYWYILSVGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFS 693
>
> Query: 321 LFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNK 359
> +M +NPG W+L C N + G+ A +V C++
> Sbjct: 694 GETVFMSMENPGLWVLGCHNSDLRNRGMTALLKVYSCDR 732
> </PRE>
>
>
> <PRE>
>
> Score = 240 bits (612), Expect = 1e-62
> Identities = 123/347 (35%), Positives = 184/347 (52%), Gaps = 28/347 (8%)
>
> Query: 726 TFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYR 785
> +F R Y+IAAVE WDY + Q V ++KKVV+R
> Sbjct: 1491 SFQKRTRHYFIAAVEQLWDYGMSESPRALRNRAQNGEVP-------------RFKKVVFR 1537
>
> Query: 786 QYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHA--------- 836
> ++ D +F P R +HLG+LGP + A+V D + + FKN A+RPYS ++
> Sbjct: 1538 EFADGSFTQPSYRGELNKHLGLLGPYIRAEVEDNIMVTFKNQASRPYSFYSSLISYPDDQ 1597
>
> Query: 837 -HGVQTESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIG 895
> G + + V P ET TY WK+ ++ C WAY+S VD KD++SGLIG
> Sbjct: 1598 EQGAEPRHNFVQPN---ETRTYFWKVQHHMAPTEDEFDCKAWAYFSDVDLEKDVHSGLIG 1654
>
> Query: 896 PLIVCRRPYLKVFNPRRKL--EFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFI 953
> PL++CR L + R+ EFAL F +FDE +SWY +N++ P + +D
> Sbjct: 1655 PLLICRANTLNAAHGRQVTVQEFALFFTIFDETKSWYFTENVERNCRAPCHLQMEDPTLK 1714
>
> Query: 954 ESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSS 1013
> E+ + HAING + L GL M + WYL+ MG+ ++H++HF GH F + + Y
> Sbjct: 1715 ENYRFHAINGYVMDTLPGLVMAQNQRIRWYLLSMGSNENIHSIHFSGHVFSVRKKEEYKM 1774
>
> Query: 1014 DVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNE 1060
> V++++PG ++T+EM P GIW + C + +H+ AGM TT+ V E
> Sbjct: 1775 AVYNLYPGVFETVEMLPSKVGIWRIECLIGEHLQAGMSTTFLVYSKE 1821
> </PRE>
>
>
> <PRE>
>
> Score = 203 bits (516), Expect = 2e-51
> Identities = 122/351 (34%), Positives = 179/351 (50%), Gaps = 31/351 (8%)
>
> Query: 369 KHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREY 428
> K RHY+IAA E +W+Y S + L + V +KK+V+RE+
> Sbjct: 1494 KRTRHYFIAAVEQLWDYGMSE----SPRALRNRAQNGEV----------PRFKKVVFREF 1539
>
> Query: 429 TDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEG 488
> D SFT RG +HLG+LGP I AEV D I VTF N+ + P S + +
> Sbjct: 1540 ADGSFTQPSYRGELNKHLGLLGPYIRAEVEDNIMVTFKNQASRPYSFYSSLISYP----- 1594
>
> Query: 489 TYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKD 548
> + Q + P + V P ET TY W V + PT + C A Y+S VD KD
> Sbjct: 1595 -------DDQEQGAEPRHNFVQPNETRTYFWKVQHHMAPTEDEFDCKAWAYFSDVDLEKD 1647
>
> Query: 549 IFTGLIGPMKICKKGSLH-ANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQV 607
> + +GLIGP+ IC+ +L+ A+GRQ V +EF LF T+FDE +S +N+ AP +
> Sbjct: 1648 VHSGLIGPLLICRANTLNAAHGRQVTV-QEFALFFTIFDETKSWYFTENVERNCRAPCHL 1706
>
> Query: 608 DKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLW 667
> ED +E+ + H++NG++ PGL M + + WYL S G+ ++H I+FSG+ +
> Sbjct: 1707 QMEDPTLKENYRFHAINGYVMDTLPGLVMAQNQRIRWYLLSMGSNENIHSIHFSGHVFSV 1766
>
> Query: 668 RGE---RRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTV 715
> R + + NL+P T+ M P G + +ECL +H GM + V
> Sbjct: 1767 RKKEEYKMAVYNLYPGVFETVEMLPSKVGIWRIECLIGEHLQAGMSTTFLV 1817
> </PRE>
>
>
> <PRE>
>
> Score = 192 bits (488), Expect = 3e-48
> Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 31/377 (8%)
>
> Query: 20 KEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDET 79
> + +HY+I +E WDY + L + QNG + R +KK ++ ++ D +
> Sbjct: 1495 RTRHYFIAAVEQLWDYGMSESPRALRN--------RAQNG--EVPR-FKKVVFREFADGS 1543
>
> Query: 80 FRTTI---EKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYP 136
> F E LG LGP I+AE D + V KN ASRPY+F+S I+Y + E P
> Sbjct: 1544 FTQPSYRGELNKHLGLLGPYIRAEVEDNIMVTFKNQASRPYSFYSSLISYPDDQEQGAEP 1603
>
> Query: 137 DNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGP 196
> + V P E TY +P E + +C Y S +D KD+ SGLIGP
> Sbjct: 1604 RHNF--------VQPNETRTYFWKVQHHMAPTEDEFDCKAWAYFSDVDLEKDVHSGLIGP 1655
>
> Query: 197 LIICKKDSLDKEKEKHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQE 255
> L+IC+ ++L+ + + +EF + F++ DE SWY +N++ C P + ++ +E
> Sbjct: 1656 LLICRANTLNAAHGRQVTVQEFALFFTIFDETKSWYFTENVERNCRAPCHLQMEDPTLKE 1715
>
> Query: 256 SNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT---NKNYRID 312
> + R +++NGY +LPGL M R++WYL MG+ ++H+ F G + + Y++
> Sbjct: 1716 NYRFHAINGYVMDTLPGLVMAQNQRIRWYLLSMGSNENIHSIHFSGHVFSVRKKEEYKMA 1775
>
> Query: 313 TINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQV--QECNKSSSKDNIRGKH 370
> NL+P M+ G W + C HL+AG+ F V +EC + R
> Sbjct: 1776 VYNLYPGVFETVEMLPSKVGIWRIECLIGEHLQAGMSTTFLVYSKECQAPLGMASGR--- 1832
>
> Query: 371 VRHYYIAAEEIIWNYAP 387
> +R + I A +AP
> Sbjct: 1833 IRDFQITASGQYGQWAP 1849
> </PRE>
>
>
> <PRE>
>
> Score = 180 bits (456), Expect = 1e-44
> Identities = 120/342 (35%), Positives = 168/342 (49%), Gaps = 44/342 (12%)
>
> Query: 732 RTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAF--LDKGEFYIGSK--YKKVVYRQY 787
> R YY+ AVE+ WDY Q E +ELH V F G +G YKK V+ ++
> Sbjct: 22 RRYYLGAVELSWDYR-QSELLRELH------VDTRFPATAPGALPLGPSVLYKKTVFVEF 74
>
> Query: 788 TDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTV- 846
> TD F V R +G+LGP + A+V D V + KNMA+ P S+HA GV S+
> Sbjct: 75 TDQLFSVARPRPP---WMGLLGPTIQAEVYDTVVVTLKNMASHPVSLHAVGVSFWKSSEG 131
>
> Query: 847 --------------TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSG 892
> LPG++ TYVW++ + +G D C+ ++Y S VD VKDL SG
> Sbjct: 132 AEYEDHTSQREKEDDKVLPGKSQTYVWQVLKENGPTASDPPCLTYSYLSHVDLVKDLNSG 191
>
> Query: 893 LIGPLIVCRRPYLKVFNPRRKLEFALLFLVFDENESWYL---DDNIKTYSDHPEKVNKDD 949
> LIG L+VCR L + EF LLF VFDE +SW+ D + P +
> Sbjct: 192 LIGALLVCREGSLTRERTQNLHEFVLLFAVFDEGKSWHSARNDSWTRAMDPAPARAQP-- 249
>
> Query: 950 EEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRG 1009
> MH +NG + +L GL V W+++GMG ++H++ GH+F +H
> Sbjct: 250 -------AMHTVNGYVNRSLPGLIGCHKKSVYWHVIGMGTSPEVHSIFLEGHTFLVRHHR 302
>
> Query: 1010 VYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGME 1051
> S +I P T+ T + F G +LL CH++ H H GME
> Sbjct: 303 QAS---LEISPLTFLTAQTFLMDLGQFLLFCHISSHHHGGME 341
> </PRE>
>
>
> <PRE>
> ><a name = 2493324></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493324&dopt=GenPept" >sp|Q28107|FA5_BOVIN</a> Coagulation factor V precursor (Activated protein C cofactor)
> Length = 2211
>
> Score = 405 bits (1042), Expect = e-112
> Identities = 241/722 (33%), Positives = 379/722 (52%), Gaps = 66/722 (9%)
>
> Query: 19 AKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDE 78
> AK + +Y+ W+Y + + +L + P +KK +Y +Y +
> Sbjct: 29 AKLRQFYVAAQSIRWNYRPE--------------STHLSSKPFETS--FKKIVYREY-EA 71
>
> Query: 79 TFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDN 138
> F+ + G LGP + AE GD + VH KN A +P + H+ GI Y K EGA Y D+
> Sbjct: 72 YFQKEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDH 131
>
> Query: 139 TTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLI 198
> T ++ DD V PG++YTY + +E P D C+T IY+S+++ +D SGLIGPL+
> Sbjct: 132 TLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLL 191
>
> Query: 199 ICKKDSLDKE-KEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESN 257
> ICKK +L ++ +K +++ V+MF+V DE+ SW Q S+
> Sbjct: 192 ICKKGTLTEDGTQKMFEKQHVLMFAVFDESKSWN----------------------QTSS 229
>
> Query: 258 RMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLF 317
> MY+VNGY G++P +++CA D + W+L GM + ++ + F+GQ L +++I I L
> Sbjct: 230 LMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAITLV 289
>
> Query: 318 PATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSS------SKDNIRGKHV 371
> AT A M G W ++ H +AG+QA+ ++ C K + ++D R
> Sbjct: 290 SATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNCAKKTRNPKKLTRDQRRHIKR 349
>
> Query: 372 RHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDA 431
> Y+IAAEE+IW+YAP N+ ++ + + RIG YKK+VY++Y D
> Sbjct: 350 WEYFIAAEEVIWDYAP-----IIPANMDK--KYRSLHLDNFSNRIGKHYKKVVYKQYQDD 402
>
> Query: 432 SFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYY 491
> SFT R E P E GILGP+I A+V DT+++ F N + SI P GV F+ Y
> Sbjct: 403 SFTKRLE-DPSSEGDGILGPIIRAQVRDTLKIVFKNMASRSYSIYPHGVTFSP------Y 455
>
> Query: 492 SPNYNPQSRSVPPSASH-VAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIF 550
> N S S + V P ET+TY+W + + PT D CL + YYS VD T+D+
> Sbjct: 456 DNEVNSSSTSGSNTMIRAVRPGETYTYKWNILESDEPTENDAQCLTRPYYSNVDITRDLA 515
>
> Query: 551 TGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKE 610
> +GLIG + ICK SL G Q+ D E VFDEN+S +EDNI F P++V ++
> Sbjct: 516 SGLIGLLLICKSRSLDRRGIQRAADIEQQAVFAVFDENKSWYIEDNIYKFCENPEKVKRD 575
>
> Query: 611 DEDFQESNKMH-----SMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTY 665
> D F ESN M ++NG++ + P L C D+V W+ S G + D+ I+F+G+++
> Sbjct: 576 DPKFYESNIMSNFTLPAINGYVPESIPILGFCFDDTVQWHFCSVGTQNDILTIHFTGHSF 635
>
> Query: 666 LWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDS 725
> ++ DT LFP ++ + D GT+ + + ++ + ++ ++ +C R +D
> Sbjct: 636 IYGKRHEDTLTLFPMQGESVTVTMDNVGTWMLTTMNSNPRSKKLRLRFRDAKCIRNDDDD 695
>
> Query: 726 TF 727
> ++
> Sbjct: 696 SY 697
> </PRE>
>
>
> <PRE>
>
> Score = 392 bits (1008), Expect = e-108
> Identities = 245/698 (35%), Positives = 355/698 (50%), Gaps = 91/698 (13%)
>
> Query: 371 VRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTD 430
> +R +Y+AA+ I WNY P + +K T S+KK+VYREY +
> Sbjct: 31 LRQFYVAAQSIRWNYRPESTHLSSKPFET-------------------SFKKIVYREY-E 70
>
> Query: 431 ASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTY 490
> A F K P+ G+LGP ++AEVGD ++V F NK PLSI G++++K +EG
> Sbjct: 71 AYFQKEK---PQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGAS 127
>
> Query: 491 YSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIF 550
> YS + P + VAP + +TYEW + + GPT+ DP CL +YYS V+ +D
> Sbjct: 128 YSDHTLPMEKM----DDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFN 183
>
> Query: 551 TGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKE 610
> +GLIGP+ ICKKG+L +G QK +K+ L VFDE++S
> Sbjct: 184 SGLIGPLLICKKGTLTEDGTQKMFEKQHVLMFAVFDESKSWN------------------ 225
>
> Query: 611 DEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGE 670
> Q S+ M+++NG++ G P +T+C D + W+L + ++ I+F+G
> Sbjct: 226 ----QTSSLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHH 281
>
> Query: 671 RRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSE------- 723
> + L TS T +M EG + + L H+ GM+ + C +++
> Sbjct: 282 KISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNCAKKTRNPKKLTR 341
>
> Query: 724 DSTFYLGERTYYIAAVEVEWDYSP--QREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKK 781
> D ++ Y+IAA EV WDY+P +K+ L N SN IG YKK
> Sbjct: 342 DQRRHIKRWEYFIAAEEVIWDYAPIIPANMDKKYRSLHLDNFSNR--------IGKHYKK 393
>
> Query: 782 VVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ- 840
> VVY+QY D +F +E + E GILGP + A V D +KI+FKNMA+R YSI+ HGV
> Sbjct: 394 VVYKQYQDDSFTKRLEDPSSEGD-GILGPIIRAQVRDTLKIVFKNMASRSYSIYPHGVTF 452
>
> Query: 841 -------TESST------VTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVK 887
> SST + PGET TY W I E D+ C+ YYS VD +
> Sbjct: 453 SPYDNEVNSSSTSGSNTMIRAVRPGETYTYKWNILESDEPTENDAQCLTRPYYSNVDITR 512
>
> Query: 888 DLYSGLIGPLIVCRRPYLKVFNPRRK--LEFALLFLVFDENESWYLDDNIKTYSDHPEKV 945
> DL SGLIG L++C+ L +R +E +F VFDEN+SWY++DNI + ++PEKV
> Sbjct: 513 DLASGLIGLLLICKSRSLDRRGIQRAADIEQQAVFAVFDENKSWYIEDNIYKFCENPEKV 572
>
> Query: 946 NKDDEEFIESNKMH-----AINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHG 1000
> +DD +F ESN M AING + ++ L D V W+ +G + D+ T+HF G
> Sbjct: 573 KRDDPKFYESNIMSNFTLPAINGYVPESIPILGFCFDDTVQWHFCSVGTQNDILTIHFTG 632
>
> Query: 1001 HSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLL 1038
> HSF Y G D +FP +++ + G W+L
> Sbjct: 633 HSFIY---GKRHEDTLTLFPMQGESVTVTMDNVGTWML 667
> </PRE>
>
>
> <PRE>
>
> Score = 234 bits (598), Expect = 5e-61
> Identities = 139/368 (37%), Positives = 195/368 (52%), Gaps = 45/368 (12%)
>
> Query: 715 VNQCRRQSEDSTFYLGERT-----YYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLD 769
> +N R + +YL T YYIAA E+ WDYS + + ++ ++ E V
> Sbjct: 1549 INSSRNPDNIAAWYLRSNTGNRKYYYIAAEEISWDYSKFVQSD-DVDYVPEDTV------ 1601
>
> Query: 770 KGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT 829
> YKKVV+R+Y DSTF + EEHLGILGP + A+V D +++ FKN+A+
> Sbjct: 1602 ---------YKKVVFRKYLDSTFTKLDPQGEYEEHLGILGPVIRAEVDDVIQVRFKNLAS 1652
>
> Query: 830 RPYSIHAHGVQTESSTVTPTL---------------PGETLTYVWKIPERSGAGTEDSAC 874
> RPYS+HAHG+ E S+ T P +T TYVW RSG SAC
> Sbjct: 1653 RPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSAC 1712
>
> Query: 875 IPWAYYSTVDQVKDLYSGLIGPLIVCRRPYL--KVFNPRRKLEFALLFLVFDENESWYLD 932
> WAYYS V+ KD++SGLIGPL++CR+ L + P EF LLF+VFDE +SWY D
> Sbjct: 1713 RAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYD 1772
>
> Query: 933 DNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEID 992
> + E S++ HAING ++ NL GL M+ + V +L+ +G D
> Sbjct: 1773 ------KKPTRSWRRASSEVKNSHEFHAINGMIY-NLPGLRMYEQEWVRLHLLNLGGSRD 1825
>
> Query: 993 LHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMET 1052
> +H VHFHG + + V+ + PG+++TLEM PG WLL V + AGM+T
> Sbjct: 1826 IHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQT 1885
>
> Query: 1053 TYTVLQNE 1060
> + ++ E
> Sbjct: 1886 PFLIVDRE 1893
> </PRE>
>
>
> <PRE>
>
> Score = 200 bits (509), Expect = 1e-50
> Identities = 120/346 (34%), Positives = 187/346 (53%), Gaps = 32/346 (9%)
>
> Query: 22 KHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFR 81
> K+YYI E +WDY+ K + S D ++ P+ +YKK ++ +Y D TF
> Sbjct: 1571 KYYYIAAEEISWDYS-----KFVQSDDVDYV-------PE--DTVYKKVVFRKYLDSTFT 1616
>
> Query: 82 TTIEKPVW---LGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDN 138
> + + LG LGP+I+AE D + V KNLASRPY+ H+HG++Y K EG Y D+
> Sbjct: 1617 KLDPQGEYEEHLGILGPVIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDD 1676
>
> Query: 139 TTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLI 198
> + ++ + D+ + P + YTY+ AT P C Y+S ++ KDI SGLIGPL+
> Sbjct: 1677 SPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLL 1736
>
> Query: 199 ICKKDSLDKEKEKHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKV-DKDNEDFQES 256
> IC+K +LDKE +D REFV++F V DE SWY Y +P + + + + + S
> Sbjct: 1737 ICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWY-------YDKKPTRSWRRASSEVKNS 1789
>
> Query: 257 NRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT---NKNYRIDT 313
> + +++NG + +LPGL M ++ V+ +L +G D+H FHGQ L + +++
> Sbjct: 1790 HEFHAINGMIY-NLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGV 1848
>
> Query: 314 INLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQV--QEC 357
> L P + M A PG W+L + +AG+Q F + +EC
> Sbjct: 1849 WPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLIVDREC 1894
> </PRE>
>
>
> <PRE>
>
> Score = 191 bits (486), Expect = 5e-48
> Identities = 140/429 (32%), Positives = 210/429 (48%), Gaps = 56/429 (13%)
>
> Query: 356 ECNKSSSKDNIRGKHVR-------HYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVF 408
> + N S + DNI ++R +YYIAAEEI W+Y+ F + SD +
> Sbjct: 1548 DINSSRNPDNIAAWYLRSNTGNRKYYYIAAEEISWDYSK-----FVQ-------SDDVDY 1595
>
> Query: 409 FEQGTTRIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNK 468
> + T YKK+V+R+Y D++FT +G EEHLGILGPVI AEV D I+V F N
> Sbjct: 1596 VPEDTV-----YKKVVFRKYLDSTFTKLDPQGEYEEHLGILGPVIRAEVDDVIQVRFKNL 1650
>
> Query: 469 GAYPLSIEPIGVRFNKNNEGTYY---SPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEV 525
> + P S+ G+ + K++EG Y SP + + ++ P+ +T+TY W
> Sbjct: 1651 ASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPN-------KTYTYVWHATTRS 1703
>
> Query: 526 GPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVF 585
> GP N C A YYSAV+P KDI +GLIGP+ IC+KG+L +EF L VF
> Sbjct: 1704 GPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVF 1763
>
> Query: 586 DENESLLLEDN-IRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVW 644
> DE +S + R + A +V + S++ H++NG +Y N PGL M + + V
> Sbjct: 1764 DEKKSWYYDKKPTRSWRRASSEV-------KNSHEFHAINGMIY-NLPGLRMYEQEWVRL 1815
>
> Query: 645 YLFSAGNEADVHGIYFSGNTYLWRGERRDTAN---LFPQTSLTLHMWPDTEGTFNVECLT 701
> +L + G D+H ++F G T L G ++ L P + TL M G + ++
> Sbjct: 1816 HLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEV 1875
>
> Query: 702 TDHYTGGMKQKYTV--NQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQ 759
> + GM+ + + +C+ ST + + I A E W Y WE +L L
> Sbjct: 1876 GEIQRAGMQTPFLIVDRECKMPMGLSTGLIADS--QIQASEF-WGY-----WEPKLARLN 1927
>
> Query: 760 EQNVSNAFL 768
> NA++
> Sbjct: 1928 NGGSYNAWI 1936
> </PRE>
>
>
> <PRE>
>
> Score = 155 bits (393), Expect = 3e-37
> Identities = 101/337 (29%), Positives = 159/337 (46%), Gaps = 64/337 (18%)
>
> Query: 732 RTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDST 791
> R +Y+AA + W+Y P E HL + +F KK+VYR+Y ++
> Sbjct: 32 RQFYVAAQSIRWNYRP------ESTHLSSKPFETSF------------KKIVYREY-EAY 72
>
> Query: 792 FRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ--------TES 843
> F+ + K + G+LGP L+A+VGD +K+ FKN A +P SIHA G++ + S
> Sbjct: 73 FQ---KEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYS 129
>
> Query: 844 STVTP-------TLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGP 896
> P PG+ TY W I E SG +D C+ YYS V+ V+D SGLIGP
> Sbjct: 130 DHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGP 189
>
> Query: 897 LIVCRRPYLKVFNPRRKLE--FALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIE 954
> L++C++ L ++ E L+F VFDE++SW
> Sbjct: 190 LLICKKGTLTEDGTQKMFEKQHVLMFAVFDESKSWNQ----------------------T 227
>
> Query: 955 SNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSD 1014
> S+ M+ +NG + G + +T+ D ++W+L+GM + +L ++HF+G + H +
> Sbjct: 228 SSLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKI---S 284
>
> Query: 1015 VFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGME 1051
> + T T M G W + + H AGM+
> Sbjct: 285 AITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQ 321
> </PRE>
>
>
> <PRE>
> ><a name = 18202922></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18202922&dopt=GenPept" >sp|Q9GLP1|FA5_PIG</a> Coagulation factor V precursor (Activated protein C cofactor)
> Length = 2258
>
> Score = 402 bits (1032), Expect = e-111
> Identities = 232/669 (34%), Positives = 363/669 (53%), Gaps = 45/669 (6%)
>
> Query: 67 YKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITY 126
> +KK +Y +Y + F+ G LGP + A+ GD + VH +N A +P + H GI Y
> Sbjct: 61 FKKIVYREY-EAYFQKEKPPSRMSGLLGPTLYADVGDIMKVHFRNKADKPLSIHPQGIKY 119
>
> Query: 127 YKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAP 186
> K EGA YPD+T ++ DD V PG++YTY +E+ P D C+T IY+S+ +
> Sbjct: 120 SKFAEGASYPDHTFLVEKMDDAVAPGQEYTYEWNISEDSGPTHNDPPCLTHIYYSYENLI 179
>
> Query: 187 KDIASGLIGPLIICKKDSLDKEK-EKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEK 245
> +D SGLIGPL+ICKK +L ++ +K D+++V+MF+V DE+ SW
> Sbjct: 180 QDFNSGLIGPLLICKKGTLTEDGIQKMFDKQYVLMFAVFDESKSWN-------------- 225
>
> Query: 246 VDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT 305
> Q S+ MY+VNGY G++P +++CA D + W+L GM + ++ + F GQ L
> Sbjct: 226 --------QSSSLMYTVNGYVNGTMPDITVCAYDHISWHLIGMSSGPELFSIHFSGQVLE 277
>
> Query: 306 NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDN 365
> ++++ I L AT A M G+W +S H +AG+QA+ ++ C K + K
> Sbjct: 278 QNHHKVSAITLVSATSTTANMTVSPEGKWPISSLIPKHFQAGMQAYIDIKNCAKKTRKPK 337
>
> Query: 366 I----RGKHVRH--YYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGS 419
> + +H++ Y+IAAEE+IW+YAP K+ ++ + + +IG
> Sbjct: 338 KLTRDQRRHIKRWEYFIAAEEVIWDYAPIIPANMDKKY-------RSLHLDNFSNQIGKH 390
>
> Query: 420 YKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIG 479
> YKK+VY++Y D SFT R E P + GILGPVI A+V DT+++ F N + SI P G
> Sbjct: 391 YKKVVYKQYQDESFTKRLEN-PNNKEDGILGPVIRAQVRDTLKIVFKNMASRSYSIYPHG 449
>
> Query: 480 VRFNKNNEGTYYSPNYNPQSRSVPPSASH-VAPTETFTYEWTVPKEVGPTNADPVCLAKM 538
> V F+ Y + N S S + V P ET+TY+W + + PT D CL +
> Sbjct: 450 VTFSP------YEDDVNSSSTSDNNTMIRAVQPGETYTYKWNILESDEPTENDAQCLTRP 503
>
> Query: 539 YYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIR 598
> YYS VD T+DI +GLIG + ICK SL G Q+ D E VFDEN+S +EDNI
> Sbjct: 504 YYSNVDITRDIASGLIGLLLICKSRSLDKRGIQRTADIEQKAVFAVFDENKSWYIEDNIY 563
>
> Query: 599 MFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGI 658
> F P++V ++D F ESN M ++NG++ + P L C D+V W+ S ++ I
> Sbjct: 564 KFCENPEKVKRDDPKFYESNIMSTINGYVPESIPTLGFCFDDTVQWHFCSVRTHDNILTI 623
>
> Query: 659 YFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQC 718
> +F+G+++++ DT LFP ++ + D GT+ + + ++ ++ K+ +C
> Sbjct: 624 HFTGHSFIYGKRHEDTLTLFPMRGESVTVTMDNVGTWMLTTMNSNPRNKKLQLKFRDVKC 683
>
> Query: 719 RRQSEDSTF 727
> R ++ ++
> Sbjct: 684 IRDDDEDSY 692
> </PRE>
>
>
> <PRE>
>
> Score = 390 bits (1003), Expect = e-108
> Identities = 243/693 (35%), Positives = 350/693 (50%), Gaps = 86/693 (12%)
>
> Query: 371 VRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTD 430
> VR +Y+AA+ I WNY P T P S S+KK+VYREY +
> Sbjct: 31 VRQFYVAAQSISWNYHPEP---------THPSSSP----------FATSFKKIVYREY-E 70
>
> Query: 431 ASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTY 490
> A F K P G+LGP ++A+VGD ++V F NK PLSI P G++++K EG
> Sbjct: 71 AYFQKEK---PPSRMSGLLGPTLYADVGDIMKVHFRNKADKPLSIHPQGIKYSKFAEGA- 126
>
> Query: 491 YSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIF 550
> +Y + V VAP + +TYEW + ++ GPT+ DP CL +YYS + +D
> Sbjct: 127 ---SYPDHTFLVEKMDDAVAPGQEYTYEWNISEDSGPTHNDPPCLTHIYYSYENLIQDFN 183
>
> Query: 551 TGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKE 610
> +GLIGP+ ICKKG+L +G QK DK++ L VFDE++S
> Sbjct: 184 SGLIGPLLICKKGTLTEDGIQKMFDKQYVLMFAVFDESKSWN------------------ 225
>
> Query: 611 DEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGE 670
> Q S+ M+++NG++ G P +T+C D + W+L + ++ I+FSG
> Sbjct: 226 ----QSSSLMYTVNGYVNGTMPDITVCAYDHISWHLIGMSSGPELFSIHFSGQVLEQNHH 281
>
> Query: 671 RRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSE------- 723
> + L TS T +M EG + + L H+ GM+ + C +++
> Sbjct: 282 KVSAITLVSATSTTANMTVSPEGKWPISSLIPKHFQAGMQAYIDIKNCAKKTRKPKKLTR 341
>
> Query: 724 DSTFYLGERTYYIAAVEVEWDYSP--QREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKK 781
> D ++ Y+IAA EV WDY+P +K+ L N SN IG YKK
> Sbjct: 342 DQRRHIKRWEYFIAAEEVIWDYAPIIPANMDKKYRSLHLDNFSNQ--------IGKHYKK 393
>
> Query: 782 VVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ- 840
> VVY+QY D +F +E +E GILGP + A V D +KI+FKNMA+R YSI+ HGV
> Sbjct: 394 VVYKQYQDESFTKRLENPNNKED-GILGPVIRAQVRDTLKIVFKNMASRSYSIYPHGVTF 452
>
> Query: 841 -------TESST------VTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVK 887
> SST + PGET TY W I E D+ C+ YYS VD +
> Sbjct: 453 SPYEDDVNSSSTSDNNTMIRAVQPGETYTYKWNILESDEPTENDAQCLTRPYYSNVDITR 512
>
> Query: 888 DLYSGLIGPLIVCRRPYLKVFNPRRK--LEFALLFLVFDENESWYLDDNIKTYSDHPEKV 945
> D+ SGLIG L++C+ L +R +E +F VFDEN+SWY++DNI + ++PEKV
> Sbjct: 513 DIASGLIGLLLICKSRSLDKRGIQRTADIEQKAVFAVFDENKSWYIEDNIYKFCENPEKV 572
>
> Query: 946 NKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQY 1005
> +DD +F ESN M ING + ++ L D V W+ + ++ T+HF GHSF Y
> Sbjct: 573 KRDDPKFYESNIMSTINGYVPESIPTLGFCFDDTVQWHFCSVRTHDNILTIHFTGHSFIY 632
>
> Query: 1006 KHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLL 1038
> G D +FP +++ + G W+L
> Sbjct: 633 ---GKRHEDTLTLFPMRGESVTVTMDNVGTWML 662
> </PRE>
>
>
> <PRE>
>
> Score = 237 bits (605), Expect = 7e-62
> Identities = 140/368 (38%), Positives = 194/368 (52%), Gaps = 45/368 (12%)
>
> Query: 715 VNQCRRQSEDSTFYL-----GERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLD 769
> +N R + +YL R YYIAA E+ WDYS + E ++ + E +
> Sbjct: 1596 INSSRNPDNIAAWYLRSNNGNRRNYYIAAEELSWDYSKFTQRE-DIDDVPEHTI------ 1648
>
> Query: 770 KGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMAT 829
> YKKVV+R+Y DSTF R EEHLGILGP + A+V D +++ FKN+A+
> Sbjct: 1649 ---------YKKVVFRKYLDSTFTKLDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNLAS 1699
>
> Query: 830 RPYSIHAHGVQTESSTVTPTL---------------PGETLTYVWKIPERSGAGTEDSAC 874
> RPYS+HAHG+ E S+ T P + TYVW ERSG + SAC
> Sbjct: 1700 RPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAVQPNSSYTYVWHATERSGPESPGSAC 1759
>
> Query: 875 IPWAYYSTVDQVKDLYSGLIGPLIVCRRPYLKVFN--PRRKLEFALLFLVFDENESWYLD 932
> WAYYS V+ KD++SGLIGPL++CR+ L N P EF LLF+VFDE +SWY +
> Sbjct: 1760 RAWAYYSAVNPEKDIHSGLIGPLLICRKGTLHKENNMPVDMREFVLLFMVFDEKKSWYYE 1819
>
> Query: 933 DNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEID 992
> E S+K HAING ++ NL GL M+ + V +L+ +G D
> Sbjct: 1820 KKF------TRSWRLTSSEVKNSHKFHAINGMIY-NLPGLRMYEQEWVRLHLLNLGGSRD 1872
>
> Query: 993 LHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMET 1052
> +H VHFHG + + V+ + PG+++TLEM G WLL V ++ AGM+T
> Sbjct: 1873 IHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKTSKAGWWLLDTEVGENQRAGMQT 1932
>
> Query: 1053 TYTVLQNE 1060
> + ++ E
> Sbjct: 1933 PFLIIDRE 1940
> </PRE>
>
>
> <PRE>
>
> Score = 235 bits (600), Expect = 3e-61
> Identities = 130/349 (37%), Positives = 190/349 (54%), Gaps = 8/349 (2%)
>
> Query: 20 KEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDET 79
> K Y+I E WDYA ++D ++ +++L N ++IG+ YKK +Y QY DE+
> Sbjct: 348 KRWEYFIAAEEVIWDYAPIIPA----NMDKKYRSLHLDNFSNQIGKHYKKVVYKQYQDES 403
>
> Query: 80 FRTTIEKP--VWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPD 137
> F +E P G LGP+I+A+ D + + KN+ASR Y+ + HG+T + +E +
> Sbjct: 404 FTKRLENPNNKEDGILGPVIRAQVRDTLKIVFKNMASRSYSIYPHGVT-FSPYEDDVNSS 462
>
> Query: 138 NTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPL 197
> +T+D V PGE YTY E P E D C+TR Y+S++D +DIASGLIG L
> Sbjct: 463 STSDNNTMIRAVQPGETYTYKWNILESDEPTENDAQCLTRPYYSNVDITRDIASGLIGLL 522
>
> Query: 198 IICKKDSLDKEK-EKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQES 256
> +ICK SLDK ++ D E +F+V DEN SWY+EDNI +C PEKV +D+ F ES
> Sbjct: 523 LICKSRSLDKRGIQRTADIEQKAVFAVFDENKSWYIEDNIYKFCENPEKVKRDDPKFYES 582
>
> Query: 257 NRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINL 316
> N M ++NGY S+P L C +D V+W+ + ++ F G + DT+ L
> Sbjct: 583 NIMSTINGYVPESIPTLGFCFDDTVQWHFCSVRTHDNILTIHFTGHSFIYGKRHEDTLTL 642
>
> Query: 317 FPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDN 365
> FP + N G WML+ N N LQ F+ +C + +D+
> Sbjct: 643 FPMRGESVTVTMDNVGTWMLTTMNSNPRNKKLQLKFRDVKCIRDDDEDS 691
> </PRE>
>
>
> <PRE>
>
> Score = 199 bits (507), Expect = 2e-50
> Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 30/345 (8%)
>
> Query: 22 KHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFR 81
> ++YYI E +WDY S +++ I EH+ +YKK ++ +Y D TF
> Sbjct: 1618 RNYYIAAEELSWDY-SKFTQREDIDDVPEHT-------------IYKKVVFRKYLDSTFT 1663
>
> Query: 82 TTIEKPVW---LGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDN 138
> + + LG LGPII+AE D + V KNLASRPY+ H+HG++Y K EG Y D+
> Sbjct: 1664 KLDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDD 1723
>
> Query: 139 TTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLI 198
> + ++ + D+ V P YTY+ ATE P C Y+S ++ KDI SGLIGPL+
> Sbjct: 1724 SPEWFKEDNAVQPNSSYTYVWHATERSGPESPGSACRAWAYYSAVNPEKDIHSGLIGPLL 1783
>
> Query: 199 ICKKDSLDKEKEKHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESN 257
> IC+K +L KE +D REFV++F V DE SWY E + + + S+
> Sbjct: 1784 ICRKGTLHKENNMPVDMREFVLLFMVFDEKKSWYYEKKF------TRSWRLTSSEVKNSH 1837
>
> Query: 258 RMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT---NKNYRIDTI 314
> + +++NG + +LPGL M ++ V+ +L +G D+H FHGQ L + +++
> Sbjct: 1838 KFHAINGMIY-NLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVW 1896
>
> Query: 315 NLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQV--QEC 357
> L P + M G W+L + + +AG+Q F + +EC
> Sbjct: 1897 PLLPGSFKTLEMKTSKAGWWLLDTEVGENQRAGMQTPFLIIDREC 1941
> </PRE>
>
>
> <PRE>
>
> Score = 193 bits (491), Expect = 1e-48
> Identities = 138/428 (32%), Positives = 211/428 (49%), Gaps = 54/428 (12%)
>
> Query: 356 ECNKSSSKDNIRGKHVR-------HYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVF 408
> + N S + DNI ++R +YYIAAEE+ W+Y+ FT+ + +
> Sbjct: 1595 DINSSRNPDNIAAWYLRSNNGNRRNYYIAAEELSWDYSK-----FTQREDIDDVPEHTI- 1648
>
> Query: 409 FEQGTTRIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNK 468
> YKK+V+R+Y D++FT RG EEHLGILGP+I AEV D I+V F N
> Sbjct: 1649 -----------YKKVVFRKYLDSTFTKLDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNL 1697
>
> Query: 469 GAYPLSIEPIGVRFNKNNEGTYY---SPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEV 525
> + P S+ G+ + K++EG Y SP + + +V P++S +TY W +
> Sbjct: 1698 ASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAVQPNSS-------YTYVWHATERS 1750
>
> Query: 526 GPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVF 585
> GP + C A YYSAV+P KDI +GLIGP+ IC+KG+LH +EF L VF
> Sbjct: 1751 GPESPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLHKENNMPVDMREFVLLFMVF 1810
>
> Query: 586 DENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWY 645
> DE +S E + FT + E + S+K H++NG +Y N PGL M + + V +
> Sbjct: 1811 DEKKSWYYE---KKFTRSWRLTSSE---VKNSHKFHAINGMIY-NLPGLRMYEQEWVRLH 1863
>
> Query: 646 LFSAGNEADVHGIYFSGNTYLWRGERRDTAN---LFPQTSLTLHMWPDTEGTFNVECLTT 702
> L + G D+H ++F G T L G ++ L P + TL M G + ++
> Sbjct: 1864 LLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKTSKAGWWLLDTEVG 1923
>
> Query: 703 DHYTGGMKQKYTV--NQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQE 760
> ++ GM+ + + +C+ ST + + I A E W + W+ +L L
> Sbjct: 1924 ENQRAGMQTPFLIIDRECKMPMGLSTGLIADS--QIKASEF-WGH-----WQPKLARLNN 1975
>
> Query: 761 QNVSNAFL 768
> NA++
> Sbjct: 1976 GGSYNAWI 1983
> </PRE>
>
>
> <PRE>
> ><a name = 462045></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00462045&dopt=GenPept" >sp|P12259|FA5_HUMAN</a> Coagulation factor V precursor (Activated protein C cofactor)
> Length = 2224
>
> Score = 399 bits (1026), Expect = e-110
> Identities = 232/675 (34%), Positives = 361/675 (53%), Gaps = 48/675 (7%)
>
> Query: 67 YKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITY 126
> +KK +Y +Y + F+ + G LGP + AE GD + VH KN A +P + H GI Y
> Sbjct: 61 FKKIVYREY-EPYFKKEKPQSTISGLLGPTLYAEVGDIIKVHFKNKADKPLSIHPQGIRY 119
>
> Query: 127 YKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAP 186
> K EGA Y D+T ++ DD V PG +YTY +E+ P D C+T IY+SH +
> Sbjct: 120 SKLSEGASYLDHTFPAEKMDDAVAPGREYTYEWSISEDSGPTHDDPPCLTHIYYSHENLI 179
>
> Query: 187 KDIASGLIGPLIICKKDSLDKE-KEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEK 245
> +D SGLIGPL+ICKK +L + +K D++ V++F+V DE+ SW
> Sbjct: 180 EDFNSGLIGPLLICKKGTLTEGGTQKTFDKQIVLLFAVFDESKSWS-------------- 225
>
> Query: 246 VDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT 305
> Q S+ MY+VNGY G++P +++CA D + W+L GM + ++ + F+GQ L
> Sbjct: 226 --------QSSSLMYTVNGYVNGTMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLE 277
>
> Query: 306 NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQEC-NKSSSKD 364
> ++++ I L AT A M G+W++S HL+AG+QA+ ++ C K+ +
> Sbjct: 278 QNHHKVSAITLVSATSTTANMTVGPEGKWIISSLTPKHLQAGMQAYIDIKNCPKKTRNLK 337
>
> Query: 365 NIRGKHVRH-----YYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGS 419
> I + RH Y+IAAEE+IW+YAP K+ + + + +IG
> Sbjct: 338 KITREQRRHMKRWEYFIAAEEVIWDYAPVIPANMDKKYRSQ-------HLDNFSNQIGKH 390
>
> Query: 420 YKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIG 479
> YKK++Y +Y D SFT P + GILGP+I A+V DT+++ F N + P SI P G
> Sbjct: 391 YKKVMYTQYEDESFTKHTVN-PNMKEDGILGPIIRAQVRDTLKIVFKNMASRPYSIYPHG 449
>
> Query: 480 VRFNKNNE---GTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLA 536
> V F+ + ++ S N R+V P ET+TY+W + + PT D CL
> Sbjct: 450 VTFSPYEDEVNSSFTSGRNNTMIRAVQPG-------ETYTYKWNILEFDEPTENDAQCLT 502
>
> Query: 537 KMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDN 596
> + YYS VD +DI +GLIG + ICK SL G Q+ D E VFDEN+S LEDN
> Sbjct: 503 RPYYSDVDIMRDIASGLIGLLLICKSRSLDRRGIQRAADIEQQAVFAVFDENKSWYLEDN 562
>
> Query: 597 IRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVH 656
> I F PD+V ++D F ESN M ++NG++ + L C D+V W+ S G + ++
> Sbjct: 563 INKFCENPDEVKRDDPKFYESNIMSTINGYVPESITTLGFCFDDTVQWHFCSVGTQNEIL 622
>
> Query: 657 GIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVN 716
> I+F+G+++++ DT LFP ++ + D GT+ + + + + ++ K+
> Sbjct: 623 TIHFTGHSFIYGKRHEDTLTLFPMRGESVTVTMDNVGTWMLTSMNSSPRSKKLRLKFRDV 682
>
> Query: 717 QCRRQSEDSTFYLGE 731
> +C ++ ++ + E
> Sbjct: 683 KCIPDDDEDSYEIFE 697
> </PRE>
>
>
> <PRE>
>
> Score = 383 bits (984), Expect = e-106
> Identities = 236/695 (33%), Positives = 351/695 (49%), Gaps = 89/695 (12%)
>
> Query: 371 VRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTD 430
> +R +Y+AA+ I W+Y P + ++T S+KK+VYREY
> Sbjct: 31 LRQFYVAAQGISWSYRPEPTNSSLNLSVT-------------------SFKKIVYREYEP 71
>
> Query: 431 ASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTY 490
> K+ P+ G+LGP ++AEVGD I+V F NK PLSI P G+R++K +EG
> Sbjct: 72 YF----KKEKPQSTISGLLGPTLYAEVGDIIKVHFKNKADKPLSIHPQGIRYSKLSEGAS 127
>
> Query: 491 YSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIF 550
> Y + P + VAP +TYEW++ ++ GPT+ DP CL +YYS + +D
> Sbjct: 128 YLDHTFPAEKM----DDAVAPGREYTYEWSISEDSGPTHDDPPCLTHIYYSHENLIEDFN 183
>
> Query: 551 TGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKE 610
> +GLIGP+ ICKKG+L G QK DK+ L VFDE++S
> Sbjct: 184 SGLIGPLLICKKGTLTEGGTQKTFDKQIVLLFAVFDESKSWS------------------ 225
>
> Query: 611 DEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGE 670
> Q S+ M+++NG++ G P +T+C D + W+L + ++ I+F+G
> Sbjct: 226 ----QSSSLMYTVNGYVNGTMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLEQNHH 281
>
> Query: 671 RRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLG 730
> + L TS T +M EG + + LT H GM+ + C +++ +
> Sbjct: 282 KVSAITLVSATSTTANMTVGPEGKWIISSLTPKHLQAGMQAYIDIKNCPKKTRNLKKITR 341
>
> Query: 731 ERT-------YYIAAVEVEWDYSP--QREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKK 781
> E+ Y+IAA EV WDY+P +K+ N SN IG YKK
> Sbjct: 342 EQRRHMKRWEYFIAAEEVIWDYAPVIPANMDKKYRSQHLDNFSNQ--------IGKHYKK 393
>
> Query: 782 VVYRQYTDSTF-RVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ 840
> V+Y QY D +F + V +E+ GILGP + A V D +KI+FKNMA+RPYSI+ HGV
> Sbjct: 394 VMYTQYEDESFTKHTVNPNMKED--GILGPIIRAQVRDTLKIVFKNMASRPYSIYPHGVT 451
>
> Query: 841 ---------------TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQ 885
> ++ + PGET TY W I E D+ C+ YYS VD
> Sbjct: 452 FSPYEDEVNSSFTSGRNNTMIRAVQPGETYTYKWNILEFDEPTENDAQCLTRPYYSDVDI 511
>
> Query: 886 VKDLYSGLIGPLIVCRRPYLKVFNPRRK--LEFALLFLVFDENESWYLDDNIKTYSDHPE 943
> ++D+ SGLIG L++C+ L +R +E +F VFDEN+SWYL+DNI + ++P+
> Sbjct: 512 MRDIASGLIGLLLICKSRSLDRRGIQRAADIEQQAVFAVFDENKSWYLEDNINKFCENPD 571
>
> Query: 944 KVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSF 1003
> +V +DD +F ESN M ING + ++ L D V W+ +G + ++ T+HF GHSF
> Sbjct: 572 EVKRDDPKFYESNIMSTINGYVPESITTLGFCFDDTVQWHFCSVGTQNEILTIHFTGHSF 631
>
> Query: 1004 QYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLL 1038
> Y G D +FP +++ + G W+L
> Sbjct: 632 IY---GKRHEDTLTLFPMRGESVTVTMDNVGTWML 663
> </PRE>
>
>
> <PRE>
>
> Score = 236 bits (603), Expect = 1e-61
> Identities = 138/370 (37%), Positives = 199/370 (53%), Gaps = 45/370 (12%)
>
> Query: 715 VNQCRRQSEDSTFYL-----GERTYYIAAVEVEWDYSP--QREWEKELHHLQEQNVSNAF 767
> +N R + +YL R YYIAA E+ WDYS QRE + E
> Sbjct: 1558 INSSRDPDNIAAWYLRSNNGNRRNYYIAAEEISWDYSEFVQRETDIE------------- 1604
>
> Query: 768 LDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNM 827
> D + + YKKVV+R+Y DSTF R EEHLGILGP + A+V D +++ FKN+
> Sbjct: 1605 -DSDDIPEDTTYKKVVFRKYLDSTFTKRDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNL 1663
>
> Query: 828 ATRPYSIHAHGVQTESSTVTPTL---------------PGETLTYVWKIPERSGAGTEDS 872
> A+RPYS+HAHG+ E S+ T P + TYVW ERSG + S
> Sbjct: 1664 ASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAVQPNSSYTYVWHATERSGPESPGS 1723
>
> Query: 873 ACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPYLKVFN--PRRKLEFALLFLVFDENESWY 930
> AC WAYYS V+ KD++SGLIGPL++C++ L + P EF LLF+ FDE +SWY
> Sbjct: 1724 ACRAWAYYSAVNPEKDIHSGLIGPLLICQKGILHKDSNMPVDMREFVLLFMTFDEKKSWY 1783
>
> Query: 931 LDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNE 990
> + ++ E +S++ HAING ++ +L GL M+ + V +L+ +G
> Sbjct: 1784 YEKKSRS------SWRLTSSEMKKSHEFHAINGMIY-SLPGLKMYEQEWVRLHLLNIGGS 1836
>
> Query: 991 IDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGM 1050
> D+H VHFHG + + V+ + PG+++TLEM PG WLL+ V ++ AGM
> Sbjct: 1837 QDIHVVHFHGQTLLENGNKQHQLGVWPLLPGSFKTLEMKASKPGWWLLNTEVGENQRAGM 1896
>
> Query: 1051 ETTYTVLQNE 1060
> +T + ++ +
> Sbjct: 1897 QTPFLIMDRD 1906
> </PRE>
>
>
> <PRE>
>
> Score = 220 bits (561), Expect = 9e-57
> Identities = 128/352 (36%), Positives = 184/352 (51%), Gaps = 13/352 (3%)
>
> Query: 20 KEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDET 79
> K Y+I E WDYA ++D ++ + +L N ++IG+ YKK +Y QY DE+
> Sbjct: 348 KRWEYFIAAEEVIWDYAPVIPA----NMDKKYRSQHLDNFSNQIGKHYKKVMYTQYEDES 403
>
> Query: 80 FRTTIEKPVWL--GFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGIT---YYKEHEGAI 134
> F P G LGPII+A+ D + + KN+ASRPY+ + HG+T Y E +
> Sbjct: 404 FTKHTVNPNMKEDGILGPIIRAQVRDTLKIVFKNMASRPYSIYPHGVTFSPYEDEVNSSF 463
>
> Query: 135 YPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLI 194
> RA V PGE YTY E P E D C+TR Y+S +D +DIASGLI
> Sbjct: 464 TSGRNNTMIRA---VQPGETYTYKWNILEFDEPTENDAQCLTRPYYSDVDIMRDIASGLI 520
>
> Query: 195 GPLIICKKDSLDKEK-EKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDF 253
> G L+ICK SLD+ ++ D E +F+V DEN SWYLEDNI +C P++V +D+ F
> Sbjct: 521 GLLLICKSRSLDRRGIQRAADIEQQAVFAVFDENKSWYLEDNINKFCENPDEVKRDDPKF 580
>
> Query: 254 QESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDT 313
> ESN M ++NGY S+ L C +D V+W+ +G + ++ F G + DT
> Sbjct: 581 YESNIMSTINGYVPESITTLGFCFDDTVQWHFCSVGTQNEILTIHFTGHSFIYGKRHEDT 640
>
> Query: 314 INLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDN 365
> + LFP + N G WML+ N + L+ F+ +C +D+
> Sbjct: 641 LTLFPMRGESVTVTMDNVGTWMLTSMNSSPRSKKLRLKFRDVKCIPDDDEDS 692
> </PRE>
>
>
> <PRE>
>
> Score = 204 bits (519), Expect = 7e-52
> Identities = 119/342 (34%), Positives = 182/342 (52%), Gaps = 24/342 (7%)
>
> Query: 22 KHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFR 81
> ++YYI E +WDY+ E D E S+ ++ YKK ++ +Y D TF
> Sbjct: 1580 RNYYIAAEEISWDYS----EFVQRETDIEDSDDIPED------TTYKKVVFRKYLDSTFT 1629
>
> Query: 82 TTIEKPVW---LGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDN 138
> + + LG LGPII+AE D + V KNLASRPY+ H+HG++Y K EG Y D+
> Sbjct: 1630 KRDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDD 1689
>
> Query: 139 TTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLI 198
> + ++ + D+ V P YTY+ ATE P C Y+S ++ KDI SGLIGPL+
> Sbjct: 1690 SPEWFKEDNAVQPNSSYTYVWHATERSGPESPGSACRAWAYYSAVNPEKDIHSGLIGPLL 1749
>
> Query: 199 ICKKDSLDKEKEKHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESN 257
> IC+K L K+ +D REFV++F DE SWY E ++ + + ++S+
> Sbjct: 1750 ICQKGILHKDSNMPVDMREFVLLFMTFDEKKSWYYEKKSRS------SWRLTSSEMKKSH 1803
>
> Query: 258 RMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT---NKNYRIDTI 314
> +++NG + SLPGL M ++ V+ +L +G D+H FHGQ L NK +++
> Sbjct: 1804 EFHAINGMIY-SLPGLKMYEQEWVRLHLLNIGGSQDIHVVHFHGQTLLENGNKQHQLGVW 1862
>
> Query: 315 NLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQE 356
> L P + M A PG W+L+ + + +AG+Q F + +
> Sbjct: 1863 PLLPGSFKTLEMKASKPGWWLLNTEVGENQRAGMQTPFLIMD 1904
> </PRE>
>
>
> <PRE>
>
> Score = 193 bits (490), Expect = 2e-48
> Identities = 128/377 (33%), Positives = 189/377 (49%), Gaps = 42/377 (11%)
>
> Query: 358 NKSSSKDNIRGKHVR-------HYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFE 410
> N S DNI ++R +YYIAAEEI W+Y+ F + SD
> Sbjct: 1559 NSSRDPDNIAAWYLRSNNGNRRNYYIAAEEISWDYSE-----FVQRETDIEDSDD---IP 1610
>
> Query: 411 QGTTRIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGA 470
> + TT YKK+V+R+Y D++FT R RG EEHLGILGP+I AEV D I+V F N +
> Sbjct: 1611 EDTT-----YKKVVFRKYLDSTFTKRDPRGEYEEHLGILGPIIRAEVDDVIQVRFKNLAS 1665
>
> Query: 471 YPLSIEPIGVRFNKNNEGTYY---SPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGP 527
> P S+ G+ + K++EG Y SP + + +V P++S +TY W + GP
> Sbjct: 1666 RPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAVQPNSS-------YTYVWHATERSGP 1718
>
> Query: 528 TNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDE 587
> + C A YYSAV+P KDI +GLIGP+ IC+KG LH + +EF L FDE
> Sbjct: 1719 ESPGSACRAWAYYSAVNPEKDIHSGLIGPLLICQKGILHKDSNMPVDMREFVLLFMTFDE 1778
>
> Query: 588 NESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLF 647
> +S E R + ++S++ H++NG +Y + PGL M + + V +L
> Sbjct: 1779 KKSWYYEKKSR------SSWRLTSSEMKKSHEFHAINGMIY-SLPGLKMYEQEWVRLHLL 1831
>
> Query: 648 SAGNEADVHGIYFSGNTYLWRGERRDTAN---LFPQTSLTLHMWPDTEGTFNVECLTTDH 704
> + G D+H ++F G T L G ++ L P + TL M G + + ++
> Sbjct: 1832 NIGGSQDIHVVHFHGQTLLENGNKQHQLGVWPLLPGSFKTLEMKASKPGWWLLNTEVGEN 1891
>
> Query: 705 YTGGMKQKYTV--NQCR 719
> GM+ + + CR
> Sbjct: 1892 QRAGMQTPFLIMDRDCR 1908
> </PRE>
>
>
> <PRE>
>
> Score = 149 bits (376), Expect = 3e-35
> Identities = 96/337 (28%), Positives = 159/337 (46%), Gaps = 64/337 (18%)
>
> Query: 732 RTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDST 791
> R +Y+AA + W Y P+ +N+ L+ + +KK+VYR+Y +
> Sbjct: 32 RQFYVAAQGISWSYRPEP--------------TNSSLNLSV----TSFKKIVYREY-EPY 72
>
> Query: 792 FRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTE-----SSTV 846
> F+ + K + G+LGP L+A+VGD +K+ FKN A +P SIH G++ +S +
> Sbjct: 73 FK---KEKPQSTISGLLGPTLYAEVGDIIKVHFKNKADKPLSIHPQGIRYSKLSEGASYL 129
>
> Query: 847 TPTLPGETL----------TYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGP 896
> T P E + TY W I E SG +D C+ YYS + ++D SGLIGP
> Sbjct: 130 DHTFPAEKMDDAVAPGREYTYEWSISEDSGPTHDDPPCLTHIYYSHENLIEDFNSGLIGP 189
>
> Query: 897 LIVCRRPYLKVFNPRRKLE--FALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIE 954
> L++C++ L ++ + LLF VFDE++SW ++
> Sbjct: 190 LLICKKGTLTEGGTQKTFDKQIVLLFAVFDESKSWSQSSSL------------------- 230
>
> Query: 955 SNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSD 1014
> M+ +NG + G + +T+ D ++W+L+GM + +L ++HF+G + H V
> Sbjct: 231 ---MYTVNGYVNGTMPDITVCAHDHISWHLLGMSSGPELFSIHFNGQVLEQNHHKV---S 284
>
> Query: 1015 VFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGME 1051
> + T T M G W++ H+ AGM+
> Sbjct: 285 AITLVSATSTTANMTVGPEGKWIISSLTPKHLQAGMQ 321
> </PRE>
>
>
> <PRE>
> ><a name = 1351670></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01351670&dopt=GenPept" >sp|Q09920|YAK8_SCHPO</a> Putative multicopper oxidase C1F7.08 precursor
> Length = 622
>
> Score = 54.7 bits (130), Expect = 9e-07
> Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 29/114 (25%)
>
> Query: 968 NLQGLTMHVGDEVNWYLMGMGNEIDL---------HTVHFHGHSFQYKHRG-----VYSS 1013
> NL+ +T G N Y+ G+ +D+ H H HGH+FQ RG +YS
> Sbjct: 384 NLEPVTY--GPYTNAYIFEYGDVVDVIIDNHDTGKHPFHLHGHTFQVLERGEENAGLYSD 441
>
> Query: 1014 -------------DVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTY 1054
> D +I PG++ + PG W++HCH+ H+ +G+ T+
> Sbjct: 442 QESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGLLATF 495
> </PRE>
>
>
> <PRE>
>
> Score = 36.2 bits (82), Expect = 0.33
> Identities = 15/43 (34%), Positives = 24/43 (54%)
>
> Query: 310 RIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFF 352
> R DT+ + P + +A NPG W++ C H+++GL A F
> Sbjct: 453 RRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGLLATF 495
> </PRE>
>
>
> <PRE>
> ><a name = 2833227></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833227&dopt=GenPept" >sp|Q12541|LAC1_AGABI</a> LACCASE I PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 520
>
> Score = 46.2 bits (108), Expect = 3e-04
> Identities = 27/82 (32%), Positives = 35/82 (41%), Gaps = 13/82 (15%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSSDVF--------DIFP--GTYQTLEMFPRTPGIWLLHCHVT 1043
> H H HGH+F + D F D++P G T F PG W LHCH+
> Sbjct: 417 HPFHLHGHNFDVVLAS--NDDTFNFKNPPRRDVYPINGGNTTFRFFTDNPGAWFLHCHID 474
>
> Query: 1044 DHIHAGMETTYTVLQNEDTKSG 1065
> H+ AG+ + ED SG
> Sbjct: 475 WHLEAGLAIVFAEAP-EDNVSG 495
> </PRE>
>
>
> <PRE>
> ><a name = 2833228></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833228&dopt=GenPept" >sp|Q12542|LAC2_AGABI</a> LACCASE II PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 520
>
> Score = 46.2 bits (108), Expect = 3e-04
> Identities = 27/82 (32%), Positives = 35/82 (41%), Gaps = 13/82 (15%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSSDVF--------DIFP--GTYQTLEMFPRTPGIWLLHCHVT 1043
> H H HGH+F + D F D++P G T F PG W LHCH+
> Sbjct: 417 HPFHLHGHNFDVVLAS--NDDTFNFVNPPRRDVYPINGGNTTFRFFTDNPGAWFLHCHID 474
>
> Query: 1044 DHIHAGMETTYTVLQNEDTKSG 1065
> H+ AG+ + ED SG
> Sbjct: 475 WHLEAGLAIVFAEAP-EDNVSG 495
> </PRE>
>
>
> <PRE>
> ><a name = 2493321></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493321&dopt=GenPept" >sp|Q40588|ASO_TOBAC</a> L-ASCORBATE OXIDASE PRECURSOR (ASCORBASE) (ASO)
> Length = 578
>
> Score = 44.7 bits (104), Expect = 0.001
> Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
>
> Query: 992 DLHTVHFHGHSF--------QYKHRGVYSSDVFD--------IFPGTYQTLEMFPRTPGI 1035
> ++H H HGH F ++ + V ++ + IFP + L PG+
> Sbjct: 470 EIHPWHLHGHDFWVLGYGEGKFSEKDVKKFNLKNPPLRNTAVIFPFGWTALRFVTDNPGV 529
>
> Query: 1036 WLLHCHVTDHIHAGM 1050
> W HCH+ H+H GM
> Sbjct: 530 WAFHCHIEPHLHMGM 544
> </PRE>
>
>
> <PRE>
>
> Score = 43.5 bits (101), Expect = 0.002
> Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
>
> Query: 92 FLGPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 150
> F GP I+A+ GD V VHL N L + H HGI G + D T + +
> Sbjct: 58 FPGPTIRAKAGDTVAVHLTNKLHTEGVVIHWHGI----RQIGTPWADGTAAISQC--AIN 111
>
> Query: 151 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKE 210
> PGE + Y + T YH H + ++GL G LI+ + + EKE
> Sbjct: 112 PGETFLYRFKVDK----------AGTYFYHGHYGMQR--SAGLYGSLIV---EVGEGEKE 156
>
> Query: 211 K-HIDREFVVMFS 222
> H D EF ++ S
> Sbjct: 157 PFHYDGEFNLLLS 169
> </PRE>
>
>
> <PRE>
> ><a name = 114270></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00114270&dopt=GenPept" >sp|P14133|ASO_CUCSA</a> L-ASCORBATE OXIDASE PRECURSOR (ASCORBASE) (ASO)
> Length = 587
>
> Score = 43.9 bits (102), Expect = 0.002
> Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
>
> Query: 92 FLGPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 150
> F GP I+A GD V V L N L + H HGI G + D T + +
> Sbjct: 66 FPGPTIRANAGDIVVVELTNKLHTEGVVIHWHGIL----QRGTPWADGTASISQC--AIN 119
>
> Query: 151 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKE 210
> PGE +TY + + T YH H+ + ++GL G LI+ + + +
> Sbjct: 120 PGETFTYRFVVDK----------AGTYFYHGHLGMQR--SAGLYGSLIVDPPEG--RSEP 165
>
> Query: 211 KHIDREFVVMFS 222
> H D E ++ S
> Sbjct: 166 FHYDEEINLLLS 177
> </PRE>
>
>
> <PRE>
>
> Score = 43.9 bits (102), Expect = 0.002
> Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
>
> Query: 989 NEIDLHTVHFHGHSFQ---YKHRGVYSSD--------------VFDIFPGTYQTLEMFPR 1031
> N ++H H HGH F Y Y+ + IFP + +
> Sbjct: 475 NMSEIHPWHLHGHDFWVLGYGEGKFYAPEDEKKLNLKNPPLRNTVVIFPYGWTAIRFVAD 534
>
> Query: 1032 TPGIWLLHCHVTDHIHAGMETTY 1054
> PG+W HCH+ H+H GM +
> Sbjct: 535 NPGVWAFHCHIEPHLHMGMGVVF 557
> </PRE>
>
>
> <PRE>
> ><a name = 543859></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00543859&dopt=GenPept" >sp|P37064|ASO_CUCPM</a> L-ASCORBATE OXIDASE (ASCORBASE) (ASO)
> Length = 552
>
> Score = 43.1 bits (100), Expect = 0.003
> Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
>
> Query: 92 FLGPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 150
> F GP I+A GD V V L N L + H HGI G + D T + +
> Sbjct: 31 FPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGIL----QRGTPWADGTASISQC--AIN 84
>
> Query: 151 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKE 210
> PGE + Y +PG T YH H+ + ++GL G LI+ K++
> Sbjct: 85 PGETFFYNFTV---DNPG-------TFFYHGHLGMQR--SAGLYGSLIVDPPQG--KKEP 130
>
> Query: 211 KHIDREFVVMFS 222
> H D E ++ S
> Sbjct: 131 FHYDGEINLLLS 142
> </PRE>
>
>
> <PRE>
>
> Score = 42.0 bits (97), Expect = 0.006
> Identities = 22/82 (26%), Positives = 32/82 (38%), Gaps = 16/82 (19%)
>
> Query: 989 NEIDLHTVHFHGHSFQYKHRG--VYSSD--------------VFDIFPGTYQTLEMFPRT 1032
> N + H H HGH F G +S++ IFP + +
> Sbjct: 440 NLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADN 499
>
> Query: 1033 PGIWLLHCHVTDHIHAGMETTY 1054
> PG+W HCH+ H+H GM +
> Sbjct: 500 PGVWAFHCHIEPHLHMGMGVVF 521
> </PRE>
>
>
> <PRE>
> ><a name = 2827764></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02827764&dopt=GenPept" >sp|P24792|ASO_CUCMA</a> L-ASCORBATE OXIDASE PRECURSOR (ASCORBASE)
> Length = 579
>
> Score = 42.4 bits (98), Expect = 0.005
> Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 20/84 (23%)
>
> Query: 989 NEIDLHTVHFHGHSF------------------QYKHRGVYSSDVFDIFPGTYQTLEMFP 1030
> N ++H H HGH F K+ + ++ V IFP + +
> Sbjct: 470 NLSEIHPWHLHGHDFWVLGYGDGKFTAEEESSLNLKNPPLRNTVV--IFPYGWTAIRFVA 527
>
> Query: 1031 RTPGIWLLHCHVTDHIHAGMETTY 1054
> PG+W HCH+ H+H GM +
> Sbjct: 528 DNPGVWAFHCHIEPHLHMGMGVVF 551
> </PRE>
>
>
> <PRE>
>
> Score = 42.0 bits (97), Expect = 0.006
> Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
>
> Query: 92 FLGPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 150
> F GP I+A GD V V L N L + H HGI G + D T + +
> Sbjct: 61 FPGPTIRANAGDTVVVELINKLHTEGVVIHWHGIL----QRGTPWADGTASISQC--AIN 114
>
> Query: 151 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKE 210
> PGE + Y +PG T YH H+ + ++GL G LI+ K++
> Sbjct: 115 PGETFFYNFTV---DNPG-------TFFYHGHLGMQR--SAGLYGSLIVDPPQG--KKEP 160
>
> Query: 211 KHIDREFVVMFS 222
> H D E ++ S
> Sbjct: 161 FHYDGEINLLLS 172
> </PRE>
>
>
> <PRE>
> ><a name = 2833234></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833234&dopt=GenPept" >sp|Q12719|LAC4_TRAVE</a> LACCASE 4 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 520
>
> Score = 41.6 bits (96), Expect = 0.008
> Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSSDVFDIFP-----------GTYQTLEMFPRTPGIWLLHCHV 1042
> H H HGH+F R S+D + P G T+ PG W LHCH+
> Sbjct: 418 HPFHLHGHTFSIV-RTAGSTDTNFVNPVRRDVVNTGTAGDNVTIRFTTDNPGPWFLHCHI 476
>
> Query: 1043 TDHIHAGMETTYTVLQNEDT 1062
> H+ AG + ++ +EDT
> Sbjct: 477 DFHLEAG----FAIVFSEDT 492
> </PRE>
>
>
> <PRE>
> ><a name = 2842755></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02842755&dopt=GenPept" >sp|Q99055|LAC4_TRAVI</a> LACCASE 4 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 520
>
> Score = 41.6 bits (96), Expect = 0.008
> Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSSDVFDIFP-----------GTYQTLEMFPRTPGIWLLHCHV 1042
> H H HGH+F R S+D + P G T+ PG W LHCH+
> Sbjct: 418 HPFHLHGHTFSIV-RTAGSTDTNFVNPVRRDVVNTGTVGDNVTIRFTTDNPGPWFLHCHI 476
>
> Query: 1043 TDHIHAGMETTYTVLQNEDT 1062
> H+ AG + ++ +EDT
> Sbjct: 477 DFHLEAG----FAIVFSEDT 492
> </PRE>
>
>
> <PRE>
> ><a name = 2833229></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833229&dopt=GenPept" >sp|Q12570|LAC1_BOTCI</a> LACCASE (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL OXIDASE)
> (DIPHENOL OXIDASE)
> Length = 486
>
> Score = 40.4 bits (93), Expect = 0.017
> Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
>
> Query: 994 HTVHFHGHSFQYKHRGV--YSS------------DVFDIFPGTYQTLEMFPRTPGIWLLH 1039
> H +H HGH F +G Y++ DV + G + + PG WL+H
> Sbjct: 370 HPIHLHGHDFWTLSQGTGAYTATTALNLVNPPRRDVLTLSTGGHLVIAFQIDNPGSWLMH 429
>
> Query: 1040 CHVTDHIHAGM 1050
> CH+ H+ G+
> Sbjct: 430 CHIAWHVSEGL 440
> </PRE>
>
>
> <PRE>
> ><a name = 2829462></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02829462&dopt=GenPept" >sp|P56193|LAC1_THACU</a> LACCASE 1 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 576
>
> Score = 40.0 bits (92), Expect = 0.023
> Identities = 62/288 (21%), Positives = 113/288 (38%), Gaps = 52/288 (18%)
>
> Query: 91 GFLGPIIKAETGDKVYVHLKNLASRPYTF-----HSHGITYYKEHEGAIYPDNTTDFQRA 145
> G+ GP+I A GD + V ++N + P + H HG+ ++ + D+ F
> Sbjct: 48 GYPGPLIFANKGDTLKVKVQNKLTNPEMYRTTSIHWHGLLQHRNAD-----DDGPSFV-T 101
>
> Query: 146 DDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSL 205
> + P E YTY + ++ T YHSH+ + GL GPL+I D
> Sbjct: 102 QCPIVPRESYTYTIPLDDQTG---------TYWYHSHLSS--QYVDGLRGPLVI--YDPK 148
>
> Query: 206 DKEKEKH-IDREFVVMFSVVDENFSWYLEDN--------------IKTYCSEPEKVDKDN 250
> D + + +D E V+ ++ + WY E + + + + D DN
> Sbjct: 149 DPHRRLYDVDDEKTVL--IIGD---WYHESSKAILASGNITRQRPVSATINGKGRFDPDN 203
>
> Query: 251 EDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGM-GNEVDVHAAFFHGQALTNKNY 309
> + +Y++ G L + + + F + G++V V AA ++ K Y
> Sbjct: 204 TP-ANPDTLYTLK-VKRGKRYRLRVINSSEIASFRFSVEGHKVTVIAA----DGVSTKPY 257
>
> Query: 310 RIDTINLFPATLFDAYMVA-QNPGEWMLSCQNLNHLKAGLQAFFQVQE 356
> ++D ++ D + A Q P + ++ N QA +E
> Sbjct: 258 QVDAFDILAGQRIDCVVEANQEPDTYWINAPLTNVPNKTAQALLVYEE 305
> </PRE>
>
>
> <PRE>
>
> Score = 38.1 bits (87), Expect = 0.086
> Identities = 33/118 (27%), Positives = 51/118 (42%), Gaps = 25/118 (21%)
>
> Query: 796 VERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRP-----YSIHAHGVQTESS------ 844
> V+R A + G GP + A+ GD +K+ +N T P SIH HG+ +
> Sbjct: 38 VKRNATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPEMYRTTSIHWHGLLQHRNADDDGP 97
>
> Query: 845 ---TVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIV 899
> T P +P E+ TY + +++G W + Q D GL GPL++
> Sbjct: 98 SFVTQCPIVPRESYTYTIPLDDQTGT--------YWYHSHLSSQYVD---GLRGPLVI 144
> </PRE>
>
>
> <PRE>
> ><a name = 2833189></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833189&dopt=GenPept" >sp|Q02075|LAC2_THACU</a> LACCASE 2 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 599
>
> Score = 40.0 bits (92), Expect = 0.023
> Identities = 32/115 (27%), Positives = 49/115 (41%), Gaps = 26/115 (22%)
>
> Query: 92 FLGPIIKAETGDKVYVHLKNLASRP-----YTFHSHGITYYK--EHEGAIYPDNTTDFQR 144
> F GP+I A GD + + ++N S P T H HG+ ++ E +G +
> Sbjct: 49 FPGPLITANKGDTLKITVRNKLSDPTMRRSTTIHWHGLLQHRTAEEDGPAFVTQC----- 103
>
> Query: 145 ADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLII 199
> + P E YTY + E+ T YHSH+ + GL GP++I
> Sbjct: 104 ---PIPPQESYTYTMPLGEQTG---------TYWYHSHLSS--QYVDGLRGPIVI 144
> </PRE>
>
>
> <PRE>
>
> Score = 38.1 bits (87), Expect = 0.086
> Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
>
> Query: 993 LHTVHFHGHSFQYKHRGVYSSDVF-----DIFPGTYQTLEMFPRT--PGIWLLHCHVTDH 1045
> +H +H HGH+F G + + D+ T + + RT PG W LHCH+ H
> Sbjct: 496 VHPLHLHGHAFDVVQFGDNAPNYVNPPRRDVVGVTDAGVRIQFRTDNPGPWFLHCHIDWH 555
>
> Query: 1046 IHAGMETTYTVLQNEDTKSG 1065
> + G + ED K G
> Sbjct: 556 LEEGFAMVFAEAP-EDIKKG 574
> </PRE>
>
>
> <PRE>
> ><a name = 400156></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00400156&dopt=GenPept" >sp|Q01679|LAC1_PHLRA</a> Laccase precursor (Benzenediol:oxygen oxidoreductase) (Urishiol
> oxidase) (Ligninolytic phenoloxidase)
> Length = 548
>
> Score = 39.3 bits (90), Expect = 0.039
> Identities = 21/67 (31%), Positives = 27/67 (39%), Gaps = 10/67 (14%)
>
> Query: 994 HTVHFHGHSFQ---------YKHRGVYSSDVFDIF-PGTYQTLEMFPRTPGIWLLHCHVT 1043
> H H HGH+F Y + DV I G T+ PG W LHCH+
> Sbjct: 418 HPFHLHGHTFSVVRPAGSTTYNYVNPVQRDVVSIGNTGDNVTIRFDTNNPGPWFLHCHID 477
>
> Query: 1044 DHIHAGM 1050
> H+ A +
> Sbjct: 478 WHLEAAL 484
> </PRE>
>
>
> <PRE>
> ><a name = 2833199></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833199&dopt=GenPept" >sp|Q03966|LAC1_CRYPA</a> LACCASE PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE)
> Length = 591
>
> Score = 38.9 bits (89), Expect = 0.050
> Identities = 22/86 (25%), Positives = 31/86 (35%), Gaps = 25/86 (29%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSS-------------------------DVFDIFPGTYQTLEM 1028
> H +H HGH F R S DV + P + +
> Sbjct: 463 HPIHLHGHDFVVLGRSPNVSPTAQTPYTFTSSDVSSLNGNNPIRRDVVMLPPKGWLLIAF 522
>
> Query: 1029 FPRTPGIWLLHCHVTDHIHAGMETTY 1054
> PG WL+HCH+ H+ AG+ T+
> Sbjct: 523 QTTNPGAWLMHCHIAWHVSAGLGNTF 548
> </PRE>
>
>
> <PRE>
> ><a name = 2493323></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02493323&dopt=GenPept" >sp|P78591|FET3_CANAL</a> IRON TRANSPORT MULTICOPPER OXIDASE PRECURSOR
> Length = 624
>
> Score = 38.9 bits (89), Expect = 0.050
> Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 32/106 (30%)
>
> Query: 977 GDEVNWYLMGMGNEIDL---------HTVHFHGHSFQY--KHRGVYSS------------ 1013
> G N +++ G+ +D+ H H HGH FQ +H + S
> Sbjct: 387 GTNTNSFVLQGGDIVDIVLNNFDTGKHPFHLHGHVFQLIERHEAIGSKESAVTFNVSDHA 446
>
> Query: 1014 ---------DVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGM 1050
> D + P +Y L P +W HCHV H+ G+
> Sbjct: 447 EWPEYPMIRDTVYVKPHSYMVLRFKADNPVVWFFHCHVDWHLEQGL 492
> </PRE>
>
>
> <PRE>
> ><a name = 18281739></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=18281739&dopt=GenPept" >sp|Q99056|LAC5_TRAVI</a> Laccase 5 precursor (Benzenediol:oxygen oxidoreductase) (Urishiol
> oxidase)
> Length = 527
>
> Score = 38.9 bits (89), Expect = 0.050
> Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
>
> Query: 994 HTVHFHGHSFQYKHRG----------VYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVT 1043
> H H HGH+F V V G T+ PG W LHCH+
> Sbjct: 425 HPFHLHGHTFSVVRSAGSSTFNYANPVRRDTVSTGNSGDNVTIRFTTDNPGPWFLHCHID 484
>
> Query: 1044 DHIHAGMETTYTVLQNEDT 1062
> H+ AG + ++ EDT
> Sbjct: 485 FHLEAG----FAIVWGEDT 499
> </PRE>
>
>
> <PRE>
> ><a name = 2842752></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02842752&dopt=GenPept" >sp|Q99044|LAC1_TRAVI</a> LACCASE 1 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 520
>
> Score = 38.1 bits (87), Expect = 0.086
> Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 12/73 (16%)
>
> Query: 994 HTVHFHGHSFQYKHRG---VYSSD--VF-DIFP------GTYQTLEMFPRTPGIWLLHCH 1041
> H H HGH+F VY+ D +F D+ G T+ PG W LHCH
> Sbjct: 416 HPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCH 475
>
> Query: 1042 VTDHIHAGMETTY 1054
> + H+ AG +
> Sbjct: 476 IDFHLEAGFAVVF 488
> </PRE>
>
>
> <PRE>
> ><a name = 1730082></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01730082&dopt=GenPept" >sp|Q02497|LAC1_CORHI</a> Laccase precursor (Benzenediol:oxygen oxidoreductase) (Urishiol
> oxidase) (Ligninolytic phenoloxidase)
> Length = 520
>
> Score = 38.1 bits (87), Expect = 0.086
> Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 12/73 (16%)
>
> Query: 994 HTVHFHGHSFQYKHRG---VYSSD--VF-DIFP------GTYQTLEMFPRTPGIWLLHCH 1041
> H H HGH+F VY+ D +F D+ G T+ PG W LHCH
> Sbjct: 416 HPFHLHGHAFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCH 475
>
> Query: 1042 VTDHIHAGMETTY 1054
> + H+ AG +
> Sbjct: 476 IDFHLEAGFAVVF 488
> </PRE>
>
>
> <PRE>
> ><a name = 2842753></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02842753&dopt=GenPept" >sp|Q99046|LAC2_TRAVI</a> LACCASE 2 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 519
>
> Score = 37.7 bits (86), Expect = 0.11
> Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
>
> Query: 994 HTVHFHGHSFQ---------YKHRGVYSSDVFDI---FPGTYQTLEMFPRTPGIWLLHCH 1041
> H H HGH+F Y + DV G T+ PG W LHCH
> Sbjct: 415 HPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCH 474
>
> Query: 1042 VTDHIHAGMETTY 1054
> + H+ AG +
> Sbjct: 475 IDFHLDAGFAIVF 487
> </PRE>
>
>
> <PRE>
> ><a name = 1175947></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=01175947&dopt=GenPept" >sp|P43561|FET5_YEAST</a> Iron transport multicopper oxidase FET5 precursor
> Length = 622
>
> Score = 37.7 bits (86), Expect = 0.11
> Identities = 26/120 (21%), Positives = 42/120 (34%), Gaps = 42/120 (35%)
>
> Query: 977 GDEVNWYLMGMGNEIDL---------HTVHFHGHSFQ--YKHRGVYSSDVFD-------- 1017
> GD +N L+ + I++ H H HGH+FQ K G + + +D
> Sbjct: 392 GDNINAQLLKHNDIIEVVLNNYDSGRHPFHLHGHNFQIVQKSPGFHVDEAYDESEQDEMT 451
>
> Query: 1018 -----------------------IFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTY 1054
> + P + L PG+W HCHV H+ G+ + +
> Sbjct: 452 VPYNESAPLQPFPERPMVRDTVVLEPSGHVVLRFRADNPGVWYFHCHVDWHLQQGLASVF 511
> </PRE>
>
>
> <PRE>
>
> Score = 35.4 bits (80), Expect = 0.56
> Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
>
> Query: 787 YTDSTFRVPVERKAEEEHLGILG----PQLHADVGDKVKIIFKN--MATRPYSIHAHGVQ 840
> YT S + E+ +G G P +H + GD+V++ N S+H HG+
> Sbjct: 25 YTASWVTANPDGLHEKRMIGFNGEWPLPDIHVEKGDRVELYLTNGFQDNTATSLHFHGLF 84
>
> Query: 841 TESS-------------TVTPTLPGETLTYVWKIPERSG 866
> +S T P +PG+T Y + +PE+ G
> Sbjct: 85 QNTSLGNQLQMDGPSMVTQCPIVPGQTYLYNFTVPEQVG 123
> </PRE>
>
>
> <PRE>
> ><a name = 2833233></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833233&dopt=GenPept" >sp|Q12718|LAC2_TRAVE</a> Laccase 2 precursor (Benzenediol:oxygen oxidoreductase) (Urishiol
> oxidase) (Diphenol oxidase) (Laccase I)
> Length = 519
>
> Score = 37.7 bits (86), Expect = 0.11
> Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
>
> Query: 994 HTVHFHGHSFQ---------YKHRGVYSSDVFDI---FPGTYQTLEMFPRTPGIWLLHCH 1041
> H H HGH+F Y + DV G T+ PG W LHCH
> Sbjct: 415 HPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCH 474
>
> Query: 1042 VTDHIHAGMETTY 1054
> + H+ AG +
> Sbjct: 475 IDFHLDAGFAIVF 487
> </PRE>
>
>
> <PRE>
> ><a name = 2833190></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833190&dopt=GenPept" >sp|Q02079|LAC3_THACU</a> LACCASE 3 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 572
>
> Score = 37.4 bits (85), Expect = 0.15
> Identities = 33/118 (27%), Positives = 50/118 (41%), Gaps = 25/118 (21%)
>
> Query: 796 VERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRP-----YSIHAHGVQTESS------ 844
> VER A + G GP + A+ GD +K+ +N T P SIH HG+ +
> Sbjct: 38 VERDATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPDMYRTTSIHWHGLLQHRNADDDGP 97
>
> Query: 845 ---TVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIV 899
> T P +P + TY + +++G W + Q D GL GPL++
> Sbjct: 98 AFVTQCPIVPQASYTYTMPLGDQTGT--------YWYHSHLSSQYVD---GLRGPLVI 144
> </PRE>
>
>
> <PRE>
>
> Score = 37.0 bits (84), Expect = 0.19
> Identities = 19/69 (27%), Positives = 30/69 (42%), Gaps = 7/69 (10%)
>
> Query: 993 LHTVHFHGHSFQYKHRGVYSSDVF-----DIFPGTYQTLEMFPRT--PGIWLLHCHVTDH 1045
> +H +H HGH+F G + D+ T + + +T PG W LHCH+ H
> Sbjct: 469 VHPIHLHGHTFDVVQFGNNPPNYVNPPRRDVVGATDEGVRFQFKTDNPGPWFLHCHIDWH 528
>
> Query: 1046 IHAGMETTY 1054
> + G +
> Sbjct: 529 LEEGFAMVF 537
> </PRE>
>
>
> <PRE>
>
> Score = 36.2 bits (82), Expect = 0.33
> Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
>
> Query: 91 GFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRA---DD 147
> G+ GP+I A GD + V ++N + P + + I ++ G + N D A
> Sbjct: 48 GYPGPLIFANKGDTLKVKVQNKLTNPDMYRTTSIHWH----GLLQHRNADDDGPAFVTQC 103
>
> Query: 148 KVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLII 199
> + P YTY + ++ T YHSH+ + GL GPL+I
> Sbjct: 104 PIVPQASYTYTMPLGDQTG---------TYWYHSHLSS--QYVDGLRGPLVI 144
> </PRE>
>
>
> <PRE>
> ><a name = 2833237></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833237&dopt=GenPept" >sp|Q12739|LAC2_PLEOS</a> LACCASE 2 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 533
>
> Score = 37.4 bits (85), Expect = 0.15
> Identities = 20/72 (27%), Positives = 27/72 (36%), Gaps = 11/72 (15%)
>
> Query: 994 HTVHFHGHSFQ---------YKHRGVYSSDVFDIFPGTYQ--TLEMFPRTPGIWLLHCHV 1042
> H H HGH+F Y DV + G T+ PG W LHCH+
> Sbjct: 427 HPFHLHGHTFDVIRSAGSTTYNFDTPARRDVVNTGTGANDNVTIRFVTDNPGPWFLHCHI 486
>
> Query: 1043 TDHIHAGMETTY 1054
> H+ G+ +
> Sbjct: 487 DWHLEIGLAVVF 498
> </PRE>
>
>
> <PRE>
> ><a name = 2833232></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833232&dopt=GenPept" >sp|Q12717|LAC5_TRAVE</a> LACCASE 5 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE) (LACCASE IV)
> Length = 527
>
> Score = 37.4 bits (85), Expect = 0.15
> Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
>
> Query: 994 HTVHFHGHSFQYKHRG----------VYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVT 1043
> H H HGH+F V V G T+ PG W LHCH+
> Sbjct: 425 HPFHLHGHTFSVVRSAGSSTFNYANPVRRDTVSTGNSGDNVTIRFTTDNPGPWFLHCHID 484
>
> Query: 1044 DHIHAGMETTYTVLQNEDT 1062
> H+ AG + ++ EDT
> Sbjct: 485 FHLDAG----FAIVFAEDT 499
> </PRE>
>
>
> <PRE>
> ><a name = 2833235></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833235&dopt=GenPept" >sp|Q12729|LAC1_PLEOS</a> LACCASE 1 PRECURSOR (BENZENEDIOL:OXYGEN OXIDOREDUCTASE) (URISHIOL
> OXIDASE) (DIPHENOL OXIDASE)
> Length = 529
>
> Score = 37.0 bits (84), Expect = 0.19
> Identities = 20/72 (27%), Positives = 29/72 (39%), Gaps = 11/72 (15%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSSDVFD-------IFPGTYQ----TLEMFPRTPGIWLLHCHV 1042
> H H HGH+F ++ FD + GT T+ PG W LHCH+
> Sbjct: 425 HPFHLHGHTFDVIRSAGSTTYNFDTPARRDVVNTGTDANDNVTIRFVTDNPGPWFLHCHI 484
>
> Query: 1043 TDHIHAGMETTY 1054
> H+ G+ +
> Sbjct: 485 DWHLEIGLAVVF 496
> </PRE>
>
>
> <PRE>
> ><a name = 2833200></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02833200&dopt=GenPept" >sp|Q04399|YD56_YEAST</a> PUTATIVE MULTICOPPER OXIDASE YDR506C
> Length = 608
>
> Score = 37.0 bits (84), Expect = 0.19
> Identities = 31/132 (23%), Positives = 45/132 (33%), Gaps = 33/132 (25%)
>
> Query: 958 MHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQY-----KHRGVYS 1012
> M+ +N R F + G + ++ + H H HGH FQ K G +
> Sbjct: 416 MYKVNERTFSEYVKDPVRFGFNETYDIVINSLDHMRHPWHMHGHHFQIISLGNKGDGPFH 475
>
> Query: 1013 SDV----------------------------FDIFPGTYQTLEMFPRTPGIWLLHCHVTD 1044
> DV +I +Y L + PG WLLHCHV
> Sbjct: 476 KDVQEGKAWSRYQNDLRHLARTGKAPMVRDSINIAGNSYAVLRINTEMPGKWLLHCHVEW 535
>
> Query: 1045 HIHAGMETTYTV 1056
> H+ G+ + V
> Sbjct: 536 HMMKGLGIVFEV 547
> </PRE>
>
>
> <PRE>
> ><a name = 2828219></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02828219&dopt=GenPept" >sp|P38993|FET3_YEAST</a> Iron transport multicopper oxidase FET3 precursor
> Length = 636
>
> Score = 36.6 bits (83), Expect = 0.25
> Identities = 22/82 (26%), Positives = 31/82 (36%), Gaps = 25/82 (30%)
>
> Query: 994 HTVHFHGHSFQYKHRGVYSSDV---------------FDIFPGTYQTLEMFPRT------ 1032
> H H HGH+FQ R D F +P TL + P++
> Sbjct: 413 HPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRF 472
>
> Query: 1033 ----PGIWLLHCHVTDHIHAGM 1050
> PG+W HCH+ H+ G+
> Sbjct: 473 KADNPGVWFFHCHIEWHLLQGL 494
> </PRE>
>
>
> <PRE>
> ><a name = 2827765></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=02827765&dopt=GenPept" >sp|P25006|NIR_ACHCY</a> COPPER-CONTAINING NITRITE REDUCTASE PRECURSOR (CU-NIR)
> Length = 378
>
> Score = 35.8 bits (81), Expect = 0.43
> Identities = 30/116 (25%), Positives = 48/116 (40%), Gaps = 13/116 (11%)
>
> Query: 954 ESNKMHAI--NGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVY 1011
> E ++HA+ NG + G L + +H D V L+ LH + FH + +
> Sbjct: 93 EGTEIHAMTFNGSVPGPL--MVVHENDYVELRLINPDTNTLLHNIDFHAAT-----GALG 145
>
> Query: 1012 SSDVFDIFPGTYQTLEMFPRTPGIWLLHC----HVTDHIHAGMETTYTVLQNEDTK 1063
> + + PG TL PG+++ HC V H+ +GM VL + K
> Sbjct: 146 GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLK 201
> </PRE>
>
>
> <PRE>
> ><a name = 13632794></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=13632794&dopt=GenPept" >sp|Q47452|PCOA_ECOLI</a> Copper resistance protein A precursor
> Length = 605
>
> Score = 35.8 bits (81), Expect = 0.43
> Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
>
> Query: 960 AINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRG---VYSSDVF 1016
> + NG F + + + G+ + L+ + + H +H HG + +
> Sbjct: 506 SFNGIKFSDAAPVLLKYGERLRITLIN--DTMMTHPIHLHGMWSDLEDENGNFMVRKHTI 563
>
> Query: 1017 DIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGM 1050
> D+ PGT ++ + G W HCH+ H+ GM
> Sbjct: 564 DVPPGTKRSYRVTADALGRWAYHCHLLYHMEMGM 597
> </PRE>
>
>
> <PRE>
>
> Score = 34.7 bits (78), Expect = 0.95
> Identities = 49/195 (25%), Positives = 72/195 (36%), Gaps = 39/195 (20%)
>
> Query: 91 GFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDK-V 149
> G GP+++ + GD + + +KN + + H HGI I P N +
> Sbjct: 71 GLPGPVLRWKEGDTITLKVKNRLNEQTSIHWHGI---------ILPANMDGVPGLSFMGI 121
>
> Query: 150 YPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEK 209
> P + Y Y + T YHSH + G+ G +II D+ + E
> Sbjct: 122 EPDDTYVYTFKVKQNG----------TYWYHSHSGLQEQ--EGVYGAIII---DAREPEP 166
>
> Query: 210 EKHIDREFVVMFS-VVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMYSVNGYTFG 268
> + DRE VVM S DEN L K K D+ N+ + +
> Sbjct: 167 FAY-DREHVVMLSDWTDENPHSLL------------KKLKKQSDYYNFNKPTVGSFFRDV 213
>
> Query: 269 SLPGLSMCAEDRVKW 283
> + GLS DR W
> Sbjct: 214 NTRGLSATIADRKMW 228
> </PRE>
>
>
> <PRE>
> ><a name = 20137839></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20137839&dopt=GenPept" >sp|Q8ZRS2|CUEO_SALTY</a> Blue copper oxidase cueO precursor (Copper efflux oxidase)
> Length = 536
>
> Score = 35.4 bits (80), Expect = 0.56
> Identities = 29/109 (26%), Positives = 44/109 (39%), Gaps = 15/109 (13%)
>
> Query: 961 INGRMFG-NLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQY---------KHRGV 1010
> ING++F N G W + G+G+ + LH H HG F+ HR
> Sbjct: 430 INGQVFDMNKPMFAAQKGRHERWVISGVGDMM-LHPFHIHGTQFRILSENGKAPAAHRTG 488
>
> Query: 1011 YSSDVFDIFPGTYQTLEMFPRTPG---IWLLHCHVTDHIHAGMETTYTV 1056
> + D + G + L F ++ HCH+ +H GM +TV
> Sbjct: 489 WK-DTVRVEGGISEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 536
> </PRE>
>
>
> <PRE>
> ><a name = 20137822></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=20137822&dopt=GenPept" >sp|Q8Z9E1|CUEO_SALTI</a> Blue copper oxidase cueO precursor (Copper efflux oxidase)
> Length = 536
>
> Score = 35.4 bits (80), Expect = 0.56
> Identities = 29/109 (26%), Positives = 44/109 (39%), Gaps = 15/109 (13%)
>
> Query: 961 INGRMFG-NLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQY---------KHRGV 1010
> ING++F N G W + G+G+ + LH H HG F+ HR
> Sbjct: 430 INGQVFDMNKPMFAAQKGRHERWVISGVGDMM-LHPFHIHGTQFRILSENGKAPAAHRTG 488
>
> Query: 1011 YSSDVFDIFPGTYQTLEMFPRTPG---IWLLHCHVTDHIHAGMETTYTV 1056
> + D + G + L F ++ HCH+ +H GM +TV
> Sbjct: 489 WK-DTVRVEGGISEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 536
> </PRE>
>
>
> <PRE>
> ><a name = 116921></a><a href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=00116921&dopt=GenPept" >sp|P12374|COPA_PSESM</a> Copper resistance protein A precursor
> Length = 609
>
> Score = 35.0 bits (79), Expect = 0.73
> Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
>
> Query: 91 GFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRAD-DKV 149
> G GP+++ + GD V + ++N + H HGI I P N +
> Sbjct: 71 GLPGPLLRWKEGDTVTLRVRNRLDAATSIHWHGI---------ILPPNMDGVPGLSFAGI 121
>
> Query: 150 YPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEK 209
> PG Y Y + T YHSH + + G+ GPL+I ++ + E
> Sbjct: 122 EPGGVYVYQFKVQQNG----------TYWYHSHSGFQEQV--GVYGPLVI---EAKEPEP 166
>
> Query: 210 EKHIDREFVVMFS 222
> K+ D E VVM +
> Sbjct: 167 FKY-DSEHVVMLT 178
> </PRE>
>
>
> <PRE>
>
> Score = 34.7 bits (78), Expect = 0.95
> Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
>
> Query: 960 AINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGV---YSSDVF 1016
> + +G F + Q L + G+ V L+ + + H +H HG +
> Sbjct: 510 SFDGIKFADAQPLILKYGERVRIVLVN--DTMMTHPIHLHGMWSDLEDEDGNFRVRKHTI 567
>
> Query: 1017 DIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGM 1050
> D+ PG+ ++ + G W HCH+ H+ GM
> Sbjct: 568 DMPPGSKRSYRVTADALGRWAYHCHLLYHMEMGM 601
> </PRE>
>
>
>
> <PRE>
> Database: Non-redundant SwissProt sequences
> Posted date: May 24, 2002 7:34 AM
> Number of letters in database: 40,014,366
> Number of sequences in database: 109,592
>
> Lambda K H
> 0.318 0.137 0.423
>
> Gapped
> Lambda K H
> 0.267 0.0410 0.140
>
>
> Matrix: BLOSUM62
> Gap Penalties: Existence: 11, Extension: 1
> Number of Hits to DB: 95,811,955
> Number of Sequences: 109592
> Number of extensions: 4582649
> Number of successful extensions: 9944
> Number of sequences better than 1.0: 41
> Number of HSP's better than 1.0 without gapping: 18
> Number of HSP's successfully gapped in prelim test: 23
> Number of HSP's that attempted gapping in prelim test: 9433
> Number of HSP's gapped (non-prelim): 188
> length of query: 1065
> length of database: 40,014,366
> effective HSP length: 118
> effective length of query: 947
> effective length of database: 27,082,510
> effective search space: 25647136970
> effective search space used: 25647136970
> T: 11
> A: 40
> X1: 16 ( 7.3 bits)
> X2: 38 (14.6 bits)
> X3: 64 (24.7 bits)
> S1: 41 (21.7 bits)
> S2: 78 (34.7 bits)
>
> </form>
>