[BioPython] PDB parser

[Cayte]

Under Bio.Crystal I have a class called Hetero for 3 letter pdb codes. We
may want to use it or replace it with your solution to avoid duplication.

                                                             Cayte
----- Original Message -----
From: "Michael George Lerner" <mlerner@umich.edu>
To: "Catherine Letondal" <letondal@pasteur.fr>
Cc: <biopython@biopython.org>
Sent: Monday, April 22, 2002 8:27 AM
Subject: Re: [BioPython] PDB parser


>
> I don't know about other such projects (official or not), but I'm working
> on a PDB parser.  Like Andrew Dalke's UPDB, it reads in format definition
> files and spits out parsers.  Mine uses biopython's Consumer/Parser model
> (I think that didn't exist when Andrew Dalke wrote UPDB).  It seems to
> work fairly well, except for the fact that it's really slow.  Once I can
> speed it up a bit, I'm planning on giving it back to biopython.  Actually,
> I suppose I'll give it back to biopython either way .. but people are more
> likely to actually _want_ it if it runs at a reasonable speed :).
>
> I guess this message should provide some more motivation for me to get
> back to work on my PDB parser ..
>
> -michael
>
> p.s. writing this thing has been a lot of fun.
>
> --
> This isn't a democracy;|                        _  |Michael Lerner
>  it's a cheer-ocracy.  | ASCII ribbon campaign ( ) |   Michigan
> -Torrence,  Bring It On|  - against HTML email  X  |  Biophysics
>                        |                       / \ | mlerner@umich
>
> On Mon, 22 Apr 2002, Catherine Letondal wrote:
>
> >
> > Hi,
> >
> > I have found a link to a PDB parser in a previous message in this
> > archive:
> > http://www.biopython.org/pipermail/biopython/1999-September/000038.html
> > (giving the location of a parser written by A. Dalke) I have tried it
> > and I found it useful, but, since the message is from sept 1999 and
> > Bio/PDB is almost empty, I would like to know whether it's the official
> > one, or whether there are other such projects?
> >
> > Thanks a lot!
> >
> > --
> > Catherine Letondal -- Pasteur Institute Computing Center
> > _______________________________________________
> > BioPython mailing list  -  BioPython@biopython.org
> > http://biopython.org/mailman/listinfo/biopython
> >
>
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