[BioPython] PDB parser

[Iddo Friedberg]

There's Konrad Hinsen's PDB parser, linked from Biopython's script
central. Not an official part of Biopython, and does not use the
consumer/parser module.

Iddo


On Mon, 22 Apr 2002, Michael George Lerner wrote:

:
: I don't know about other such projects (official or not), but I'm working
: on a PDB parser.Like Andrew Dalke's UPDB, it reads in format definition
: files and spits out parsers.Mine uses biopython's Consumer/Parser model
: (I think that didn't exist when Andrew Dalke wrote UPDB).It seems to
: work fairly well, except for the fact that it's really slow.Once I can
: speed it up a bit, I'm planning on giving it back to biopython.Actually,
: I suppose I'll give it back to biopython either way .. but people are more
: likely to actually _want_ it if it runs at a reasonable speed :).
:
: I guess this message should provide some more motivation for me to get
: back to work on my PDB parser ..
:
: -michael
:
: p.s. writing this thing has been a lot of fun.
:
: --
: This isn't a democracy;|                      _  |Michael Lerner
:  it's a cheer-ocracy.| ASCII ribbon campaign ( ) |   Michigan
: -Torrence,Bring It On|  - against HTML email  X  |  Biophysics
:                      |                       / \ | mlerner@umich
:
: On Mon, 22 Apr 2002, Catherine Letondal wrote:
:
: >
: > Hi,
: >
: > I have found a link to a PDB parser in a previous message in this
: > archive:
: > http://www.biopython.org/pipermail/biopython/1999-September/000038.html
: > (giving the location of a parser written by A. Dalke) I have tried it
: > and I found it useful, but, since the message is from sept 1999 and
: > Bio/PDB is almost empty, I would like to know whether it's the official
: > one, or whether there are other such projects?
: >
: >Thanks a lot!
: >
: > --
: > Catherine Letondal -- Pasteur Institute Computing Center
: > _______________________________________________
: > BioPython mailing list-  BioPython@biopython.org
: > http://biopython.org/mailman/listinfo/biopython
: >
:
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:

--

Iddo Friedberg                                  | Tel: +972-2-6757374
Dept. of Molecular Genetics and Biotechnology   | Fax: +972-2-6757308
The Hebrew University - Hadassah Medical School | email: idoerg@cc.huji.ac.il
POB 12272, Jerusalem 91120                      |
Israel                                          |
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