[BioPython] BLAST from inside python code?

[Jeffrey Chang]

There's a wrapper around blastpgp and blastall in
Bio/Blast/NCBIStandalone.py.  You can use this to call a local copy of
blast (downloadable from NCBI) to generate results.  Please let me know if
this wasn't what you were looking for.

Jeff



On Thu, 1 Mar 2001, Taylor, Deanne wrote:

> There's got to be a faster way of running blast from a python program than
> simply
> writing a script to externally call blast and parse the results, over and
> over (for big data sets).
> Anybody know of any  BLAST wrapper for python? 
> 
> deanne
> _______________________________________________
> BioPython mailing list  -  BioPython@biopython.org
> http://biopython.org/mailman/listinfo/biopython
>