[BioPython] Biopython 1.00a4 now available
Jeffrey Chang
jchang@smi.stanford.edu
Tue, 18 Dec 2001 00:22:19 -0800
Fresh off the press, Biopython 1.00a4 is now available at:
http://www.biopython.org/Download/
Thanks to everyone involved, there have been a bunch of changes,
fixes, and new additions:
minor bug fix in NCBIStandalone.blastall
optimization in dynamic programming code
new modules for logistic regression and maximum entropy
minor bug fix in ParserSupport
minor bug fixes in SCOP package
minor updates in the kMeans cluster selection code
minor bug fixes in SubsMat code
support for XML-formatted MEDLINE files
added MultiProc.run to simplify splitting code across processors
listfns.items now supports lists with unhashable items
new data type for pathways
new support for intelligenetics format
new support for metatool format
new support for NBRF format
new support for generalized launching of applications
new support for genetic algorithms
minor bug fixes in GenBank parsing
new support for Primer in the Emboss package
new support for chromosome graphics
new support for HMMs
new support for NeuralNetwork
slew of Martel fixes (see Martel docs)
While we strive to keep things bug free, this is still alpha code and
should be used by people willing to tolerate bugs, changing API's, and
general headaches.
Please send questions and comments to this list, and bugs to the
database at:
http://www.biopython.org/Bugs.shtml
Enjoy!
Jeff