[Biopython-dev] Biopython 1.70 release

[Peter Cock]

We have one confirmation via Twitter, from Ishwar Hosamani:

"Installed correctly on MacOS 10.11.6 with python 3.6.1. Ran a few
tests from the tests folder and they all passed."

https://twitter.com/ishwarvh/status/884628886453190657

Peter

On Tue, Jul 11, 2017 at 10:21 AM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> Great - I'll delay the PyPI upload and announcement until
> at least one person confirms the zip/tar-ball works for an
> install from source.
>
> Thanks,
>
> Peter
>
> On Tue, Jul 11, 2017 at 9:06 AM, Mateusz Korycinski
> <mkorycinski at protonmail.ch> wrote:
>>
>> Hi,
>>
>> I can also test that on both Mac and Linux.
>>
>> Best regards,
>> Mateusz Korycinski
>>
>> Sent with ProtonMail Secure Email.
>>
>> -------- Original Message --------
>> Subject: Re: [Biopython-dev] Biopython 1.70 release
>> Local Time: July 10, 2017 6:56 PM
>> UTC Time: July 10, 2017 4:56 PM
>> From: p.j.a.cock at googlemail.com
>> To: Sourav Singh <ssouravsingh12 at gmail.com>
>> Biopython-Dev Mailing List <biopython-dev at mailman.open-bio.org>
>>
>> Thanks for the offer Sourav, but Ben Fulton is happy to do
>> the Windows installers again for Biopython 1.70.
>>
>> It would however be great if you could download the zip file
>> (or tar-ball), and attempt to installing it from source and run
>> the tests (on Windows, Linux or Mac).
>>
>> e.g.
>>
>> wget http://biopython.org/DIST/biopython-1.70.zip
>> unzip biopython-1.70.zip
>> cd biopython-1.70
>> pip install .
>> cd Tests
>> python run_tests.py
>>
>> Thanks,
>>
>> Peter
>>
>> On Mon, Jul 10, 2017 at 5:47 PM, Sourav Singh <ssouravsingh12 at gmail.com>
>> wrote:
>>>
>>> Hello,
>>>
>>> I can help with the testing of the gzipped code and creation of Windows
>>> installers for Biopython 1.70.
>>>
>>> Regards,
>>>
>>> Sourav
>>>
>>> On Jul 10, 2017 9:59 PM, "Peter Cock" <p.j.a.cock at googlemail.com> wrote:
>>>>
>>>> Hi Ben,
>>>>
>>>> While in the not too distant future I am hoping to adopt the
>>>> NumPy approach to building wheels (and installers?) [1],
>>>> it would be much appreciated if you could make all the
>>>> Windows installers for Biopython 1.70.
>>>>
>>>> (In particular Python 3.6, but if possible also Python 2.7,
>>>> 3.4 and 3.5 - we no longer support Python 3.3)
>>>>
>>>> Now that we have Windows-based continuous integration
>>>> up and running on AppVeyor [2], I didn't feel it necessary
>>>> to bother you in advance about running the unit tests.
>>>>
>>>> Much obliged,
>>>>
>>>> Peter
>>>>
>>>> [1]
>>>> http://mailman.open-bio.org/pipermail/biopython-dev/2017-July/021817.html
>>>>
>>>> [2]
>>>> http://mailman.open-bio.org/pipermail/biopython-dev/2017-June/021797.html
>>>> https://ci.appveyor.com/project/biopython/biopython/history
>>>>
>>>>
>>>> On Mon, Jul 10, 2017 at 4:43 PM, Peter Cock <p.j.a.cock at googlemail.com>
>>>> wrote:
>>>> > Hello all,
>>>> >
>>>> > I'd like to delay the PyPI upload and official release announcement
>>>> > until
>>>> > someone else has confirmed they could install this - any volunteers?
>>>> >
>>>> > http://biopython.org/DIST/biopython-1.70.tar.gz
>>>> > http://biopython.org/DIST/biopython-1.70.zip
>>>> > Checksums:
>>>> >
>>>> > $ md5sum biopython-1.70.*
>>>> > feff7a3e2777e43f9b13039b344e06ff  biopython-1.70.tar.gz
>>>> > 6307ab27c257fe69b9dae4bfc3052f49  biopython-1.70.zip
>>>> >
>>>> > $ sha256sum biopython-1.70.*
>>>> > 4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b
>>>> > biopython-1.70.tar.gz
>>>> > 34312ce899f6c3fc9dea77ca997f9a8c228043d05284a0653577594aeb119d4f
>>>> > biopython-1.70.zip
>>>> >
>>>> > These are from this tagged commit on the main repository:
>>>> >
>>>> > https://github.com/biopython/biopython/tree/biopython-170
>>>> >
>>>> > https://github.com/biopython/biopython/commit/4d01a84f0aa8f91863075f7f0f074b4b69e53959
>>>> >
>>>> > The revised documentation is already live:
>>>> >
>>>> > http://biopython.org/DIST/docs/api/
>>>> > http://biopython.org/DIST/docs/tutorial/Tutorial.pdf
>>>> > http://biopython.org/DIST/docs/tutorial/Tutorial.html
>>>> > etc
>>>> >
>>>> > Peter
>>>> >
>>>> > On Mon, Jul 10, 2017 at 2:19 PM, Peter Cock
>>>> > <p.j.a.cock at googlemail.com> wrote:
>>>> >> Thanks everyone who helped recently with resolving
>>>> >> open issues and pull requests - especially Eric who
>>>> >> did lots last week.
>>>> >>
>>>> >> I'm going to try the release this afternoon, so please
>>>> >> consider the mast branch frozen for the time being.
>>>> >>
>>>> >> Thanks,
>>>> >>
>>>> >> Peter
>>>> _______________________________________________
>>>> Biopython-dev mailing list
>>>> Biopython-dev at mailman.open-bio.org
>>>> http://mailman.open-bio.org/mailman/listinfo/biopython-dev
>
>