[Biopython-dev] [Biopython] Upcoming NCBI BLAST XML2 format
p.j.a.cock at googlemail.com
Wed May 6 14:49:55 UTC 2015
On Wed, May 6, 2015 at 3:22 PM, Martin Mokrejs
<mmokrejs at fold.natur.cuni.cz> wrote:
> are you aware of new changes in BLAST's XML format? Time for feedback
> before it emerges. ;-)
Yes, but thanks for double checking:
I'm a little nervous about the idea that BLAST+ will not provide single
(large) XML files for multiple-query searches, and instead appears to
be going to produce one file per query and a manifest xinclude file.
This sounds problematic for things like parsing via stdout.
What have you noticed?
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