[Biopython-dev] Quantifiedcode now has cody

Peter Cock p.j.a.cock at googlemail.com
Mon Dec 7 12:05:15 UTC 2015

Hi all,

Here's the first suggestion from "Cody" at Quantified Code which
we had to reject due to it breaking under Python 2.6,


Here's the first suggestion from "Cody" at Quantified Code which
I think is useful and ready to merge/cherry-pick:


If anyone has code comments, please comment on GitHub.

If anyone has any objections to us using the Cody / Quantified Code
contribution please speak up now. e.g. What implications might this
have for the proposed re-licensing of Biopython to use the 3-clause
BSD licence? i.e. Who owns the copyright of these changes.

As an aside, Cody works by creating branches (named autofix...)
under the main Biopython repository - they can be deleted after a
change is rejected or merged. This is noteworthy as until now
we've just had the one "master" branch on this repository.



On Fri, Dec 4, 2015 at 5:20 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> We can try it, sure - although I anticipate some of its suggestions
> would have to be declined while we still support Python 2.6 and 2.7.
> Peter
> On Fri, Dec 4, 2015 at 5:11 PM, Tiago Rodrigues Antao <tra at popgen.net> wrote:
>> Hi,
>> This seems interesting:
>> https://www.quantifiedcode.com/cody
>> [Automated corrections via github pull requests]
>> If no one opposes I would try to set up automated pull requests just
>> to test this...
>> Tiago
>> _______________________________________________
>> Biopython-dev mailing list
>> Biopython-dev at mailman.open-bio.org
>> http://mailman.open-bio.org/mailman/listinfo/biopython-dev

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