[Biopython-dev] tabs in doctest results?

Vincent Davis vincent at vincentdavis.net
Fri Dec 4 17:20:27 UTC 2015


I am working on the doctests in TreeConstructor.py.
for example in this doctest
https://github.com/biopython/biopython/blob/master/Bio/Phylo/TreeConstruction.py#L353
I can't get the test to accept the output. Even when the Expect looks the
same as the Got.
I am think this might be related to "All hard tab characters are expanded
to spaces"(python docs) and it looks like the output uses spaces.
https://github.com/biopython/biopython/blob/master/Bio/Phylo/TreeConstruction.py#L291
And in fact I can fix my problem if I replace the \t with 4 spaces in the
above __str__

Recommendations as to how to fix this?

Vincent Davis
720-301-3003
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