[Biopython-dev] Time for Biopython 1.65?

Evan Parker eparker05 at gmail.com
Tue Nov 18 00:20:20 UTC 2014


The lazy-load-pull branch has been rebased on the current master and is
passing tests. It was previously failing tests due to the issue with the
MySQL connector.

On Mon Nov 17 2014 at 8:32:24 AM Peter Cock <p.j.a.cock at googlemail.com>
wrote:

> Hi all,
>
> Compared to our typical release cycle, we're a bit overdue
> for releasing Biopython 1.65.
>
> Thanks to the NBDC/DBCLS BioHackathon 2014, I was
> able to spend most of last week working on the Biopython
> pull request and issues backlog - so things are looking much
> better now.
>
> Things I think we need to fix first:
>
>  * PhyloXML output under Python 3
>     https://github.com/biopython/biopython/issues/368
>
> Things I would like to have:
>
>  * Evan's lazy loading as an experimental feature
>    https://github.com/biopython/biopython/pull/356
>
>  * Proof reading of epydoc's reStructuredText API docs
>    (which should now be much prettier than our last release)
>
> Things worth wider discussion (and maybe a beta release):
>
>  * String-like equality for Seq objects
>    https://github.com/biopython/biopython/pull/359
>
> Feedback on these or patches on other issues most
> welcome. Is there anything else I've overlooked which
> justifies delaying a release?
>
> Tiago kindly did the last couple of releases, but unless
> we have another volunteer I am willing to do this one.
>
> Thanks,
>
> Peter
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>
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