[Biopython-dev] Next biopython release (was Re: Python 3.4)

Tiago Antao tra at popgen.net
Tue May 20 15:18:11 UTC 2014


Hi,

On Tue, 20 May 2014 10:05:08 +0100
Peter Cock <p.j.a.cock at googlemail.com> wrote:

> If you have time to sort out that bytes vs unicode issue, then sure :)

I think I just did. I did not commit this directly (pull request is
below) because I think it should be looked by someone else (e.g. you ;)
). This solution imposes a minor performance cost if using
mysql.connector with python 3, but I hope nothing more.

A side comment: the use of lists for returns is not being imposed by
me - the output of fetchall is already a list.

Another comment: due to docker problems with mysql, I cannot test this
on my buildbots. You would need to add python-mysql.connector and
python3-mysql.connector to test this on your buildbots. I have to get
down to the docker issue, but it seems that having a mysql on the host
machine scr.ws the container badly (if the container has a mysql
instance itself).

https://github.com/biopython/biopython/pull/317




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