[Biopython-dev] OBO parser & DAG

[Bartek Wilczynski]

Hi Iddo,

My student has also recently implemented a module for ontologies. Maybe we
can somehow merge these efforts. His code can be found here:
https://github.com/tosterovic/biopython

the relevant part is Bio/Ontology

best
Bartek

On Mon, Jan 6, 2014 at 8:56 PM, Iddo Friedberg <idoerg at gmail.com> wrote:

> Hi all,
>
> Is there any effort going on for developing the OBO parser & Bio-ontology
> DAG? If not, my lab wants to push this. We already have a basic
> representation using digraph from networkx, and a basic OBO parser. But i'm
> checking to see if there is no duplicate effort here.
>
> All very initial development.
>
> Parser:
> https://github.com/idoerg/go-parser
>
> (the relevan module is
> https://github.com/idoerg/go-parser/blob/master/go_obo_parser.py
>
>
> DAG:
> https://github.com/osamajomaa/DAGON
>
> Thanks,
>
> Iddo
>
> --
>
> Iddo Friedberg
> http://iddo-friedberg.net/contact.html
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>


-- 
Bartek Wilczynski
==================
Institute of Informatics
University of Warsaw
http://www.mimuw.edu.pl/~bartek