[Biopython-dev] Consumer of "KW" in embl format

Peter Cock p.j.a.cock at googlemail.com
Tue Mar 12 10:58:39 UTC 2013


On Tue, Mar 12, 2013 at 10:12 AM, Xabier Bello <xbello at gmail.com> wrote:
> I think I'm not that close to the Biopython code.
>
> I found a problem (I needed to read the Keywords), and solved it quick and
> dirty. In fact, it doesn't read multiline KW. I'm not sure I could implement
> that in a fair amount of time.
>
> Regards.

No problem - I've committed your fix, a basic test, and extended this for
multiple KW lines. As discussed I've thanked you in the NEWS file too.

https://github.com/biopython/biopython/commit/fc036dcdac22252a366647823a0c7c317c303313
https://github.com/biopython/biopython/commit/606ea9360d262d21c3e01eda66c4cf9118880d46

Updating the EMBL writer in Bio/SeqIO/InsdcIO.py should be a nice
small task for any volunteer wanting to make a first contribution...

(Potential Google Summer of Code students - Hint hint ;) )

Thank you Xabier,

Peter



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