[Biopython-dev] Enhancements to Bio.Graphics.BasicChromosome

Peter Cock p.j.a.cock at googlemail.com
Wed Oct 5 21:17:38 UTC 2011


On Wed, Oct 5, 2011 at 2:32 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Wed, Oct 5, 2011 at 2:16 PM, Kevin Jacobs wrote:
>> On Mon, Oct 3, 2011 at 6:24 PM, Peter Cock wrote:
>>> Coloured background regions in the chromosome (should be
>>> able to do this already), some of which are hatched (not possible
>>> right now... would have to look into ReportLab's capabilities here).
>>> This is what you meant by banding?
>>
>> Yes-- being able to show cytobands and custom bands to designate regions
>> will be very useful for me.  As before, I'm not wed to the cross-hatching,
>> in fact the standard displays use only grayscale.
>
> OK - simple colours are easy, I can add that to the test case example.

Done, using some random placements - I didn't manage to find
the real Arabidopsis cytoband data which would have been nicer.
https://github.com/biopython/biopython/commit/24deaca63ba55e28519a4c85650ad74e849f203e

Peter




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