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// Receive DNA-Sequence by range in biopython
// May 14, 2011 at 5:33 PM

http://stackoverflow.com/questions/6004926/receive-dna-sequence-by-range-in-biopython
Hi,

i need to use a protein-prediction tool called Mutation-Taster (http://www.mutationtaster.org/). Since the input format for the batch query needs a piece of sequence surrounding the mutation, and i have only the position of the mutation within a chromosome, i need the surrounding pieces.

So far i am using biopython and i tried to find a way to receive the DNA-Sequence from the NCBI Entrez databases.

I want assign the chromosome number, nucleic start and end position within the chromosome to receive the dna-sequence for example in fasta format.

I would not mind if it is possible in another programming language.

Thanks in advance for your help


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