[Biopython-dev] SeqIO Abi Parser
w.arindrarto at gmail.com
Tue Jul 26 10:37:23 UTC 2011
You're welcome :). In that case, I'll just stick to submitting through this
I'm looking forward to your review!
Wibowo Arindrarto (bow)
On Tue, Jul 26, 2011 at 11:59, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Tue, Jul 26, 2011 at 10:08 AM, Wibowo Arindrarto
> <w.arindrarto at gmail.com> wrote:
> > Hi everyone,
> > A few weeks ago I wrote about my interest in making Biopython able to
> > the Abi trace file. I've finished writing the SeqIO plugin and some
> tests. I
> > thought this would be useful to a number of people, so I was wondering
> > what I should do after this (how will my code be reviewed?, should I just
> > with a pull request?). Of course, there are things that I might have
> > when writing the plugin, so feel free to criticize/comment :)!
> > Here's the SeqIO plugin:
> > https://github.com/bow/biopython/blob/seqio-abi/Bio/SeqIO/AbiIO.py
> > Looking forward to the reply,
> Hi Wibowo,
> You could send a pull request if you wanted, but this email to the dev list
> is enough. I probably wouldn't just merge it - I prefer to rebase to the
> current master first to get a clean history (especially if there are
> several merges in the branch history).
> I will review your work.
> In particular I plan to cross test with EMBOSS seqret to verify you produce
> the same sequence and the same PHRED quality scores - this could be
> done in test_Emboss.py
> Thanks for your work!
More information about the Biopython-dev