[Biopython-dev] Contributing - description of my code [Sequence_cleaner]

Peter Cock p.j.a.cock at googlemail.com
Fri Jul 8 12:55:32 UTC 2011

On Fri, Jul 8, 2011 at 2:18 AM, Genivaldo Gueiros
<genivaldo.gueiros at gmail.com> wrote:
> Hey guys , I ‘d like to make a contribution to Biopython community ,Well
> what I wanna share my script using python to clean sequences up , you should
> know analyzing poor data takes CPU time and interpreting the results from
> poor data takes people time, so always is importat make a preprocessing.
> Let me call my script as “Sequence_cleaner” and the big idea is to remove
> duplicate sequences, remove sequence too short ( the user define the minimum
> length)  and remove sequences which has too much unknown nucleotides ( N)  (
> the user define the % of N is allows ) and in the end the use can choose if
> he/she wanna have a file as output or print the result.
> Let me know if you are interested

Hi Genivaldo,

This sounds like something you could add to the list here,

Or it might make a nice Cookbook example:


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