[Biopython-dev] [Bug 2947] Bio.HMM calculates wrong viterbi path

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Feb 10 20:02:42 UTC 2011


------- Comment #14 from walter_gillett at yahoo.com  2011-02-10 15:02 EST -------
I have checked in a fix on my github branch to the bug mentioned in comment #4:
in the Viterbi recursion to determine state path probabilities, we must
consider states that lead *to* the current state, not those that are reachable
*from* it. See comments for this checkin:
. Forgot to mention in the comments that I also fixed a bug in the
allow_transition method and added a unit test for that method.

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