[Biopython-dev] Uniprot XML parser on TrEmbl

Andrea Pierleoni andrea at biocomp.unibo.it
Thu Nov 11 17:15:08 UTC 2010


>
> Is that the size on disk of the XML file? 62GB is a lot.

yes, my macbook is getting very hot...

> It sounds like it - have you told UniProt?

I've notified them, let's see what they say...

Anyhow the parser works. I just don't know if we should have an
internet browser-like approach interpreting errors, or just be
consistent and raise an error if there is a format error.

in this case an empty organism name is an error.




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