[Biopython-dev] Merging Bio.SeqIO SFF support?

Peter biopython at maubp.freeserve.co.uk
Tue Mar 2 12:02:53 UTC 2010


On Tue, Mar 2, 2010 at 10:08 AM, Peter wrote:
> On Mon, Mar 1, 2010 at 11:22 PM, Kevin Jacobs wrote:
>> The only glitch so far is that the indexed access mode yields sequences
>> with no alphabet assigned.  The solution is to add the following to the
>> beginning of SffDict.__init__:
>>         if alphabet is None:
>>           alphabet = Alphabet.generic_dna
>
> Thanks - I'll look at that.

Yes, that looks sensible - change commited. Would you like to be credited
in our NEWS and CONTRIB file for this little bug fix?

Peter




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