[Biopython-dev] Tested Fixup branch for Bio.PDB

Eric Talevich eric.talevich at gmail.com
Wed Jun 9 23:56:35 UTC 2010


On Tue, Jun 8, 2010 at 5:59 AM, Kristian Rother <krother at rubor.de> wrote:

>
> Hi Eric,
>
> I've checked out your pdbfixes branch and ran our 431 Unit Tests of
> ModeRNA with it. There were no changes to the master Bio.PDB branch -->
> for us everything OK.
>
> Details:
> ModeRNA (http://www.genesilico.pl/moderna) engineers RNA 3D structures and
> uses Bio.PDB for most of its operations: reading files,
> adding/copying/manipulating residues/atoms, superimposing structures,
> searching neighbors by KDTree, writing files.
>
> Right, the tests most probably did not depend directly on the code you
> changed, but as I understand you wanted to go sure the branch didnt break
> anything by accident.
>

Thanks, Kristian! I didn't expect the patches to break anything, but it's
hard to be sure until someone else has tried it.

I've pushed the pdbfixes branch to Biopython's master branch on GitHub.

Cheers,
Eric



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