[Biopython-dev] [Bug 2980] New: Bio.SeqIO can't parse EMBL CONTIG records

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Jan 7 18:11:47 UTC 2010


http://bugzilla.open-bio.org/show_bug.cgi?id=2980

           Summary: Bio.SeqIO can't parse EMBL CONTIG records
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


While the GenBank parser has been updated to cope with CONTIG records
(using an UnknownSeq object), this has not been done for the EMBL parser.
As an example test case, consider:
ftp://ftp.ebi.ac.uk/pub/databases/embl/release/rel_con_hum_01_r102.dat.gz


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