[Biopython-dev] Bug #3109: Record class in Bio.SCOP.Cla has hierarchy member as list instead of dictionary

Jeffrey Finkelstein jeffrey.finkelstein at gmail.com
Fri Aug 6 20:09:31 UTC 2010


I have submitted a bug report and a patch for a current feature of the
Bio.SCOP.Cla module that makes using it somewhat difficult. Specifically,
the Bio.Scop.Cla.Record class has a "hierarchy" member which is currently a
list, but should be a dictionary, according to the SCOP parseable
classification file format "specification" (it is an informal specification)
here:
http://scop.mrc-lmb.cam.ac.uk/scop/release-notes.html#scop-parseable-files.

For a usage example, see the comments I have made at:
http://bugzilla.open-bio.org/show_bug.cgi?id=3109

I have CC'ed the original author of the module. Gavin (or anyone else), do
you have any objections to this change?

Jeffrey



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