[Biopython-dev] Plain text BLAST parser updated

Peter biopython at maubp.freeserve.co.uk
Tue Oct 20 15:59:09 UTC 2009

On Tue, Oct 20, 2009 at 2:24 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> The output from the "new C++" blastx 2.2.22+ (and likely the
> other tools like blastp etc which are all separate executables
> now) breaks our plain text parser.
> I'll also be trying out the XML output which *should* be fine.

That seems to be fine - although I did find the BLAST record's
database_sequences property wasn't being populated, just the
alias num_sequences_in_database - fixed in github.


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