[Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Nov 17 06:06:02 UTC 2009


http://bugzilla.open-bio.org/show_bug.cgi?id=2950





------- Comment #1 from TallPaulInJax at yahoo.com  2009-11-17 01:06 EST -------
Hi Barry,

FYI: PDBParser also starts the model numbering at model 0 no matter what the
true model number is in the PDB file. I am going to file that as a bug as well.
Look at line 106 and 122 here:
http://github.com/biopython/biopython/blob/master/Bio/PDB/PDBParser.py#L122

Wanted to let you know!

This would be REALLY problematic if the actual model numbers in the PDB file
skip around, ie, MODEL 2, then MODEL 4, etc. I don't know if that's possible,
I'm just a comp sci guy! Do you know?

Paul


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