[Biopython-dev] [Bug 2837] New: Reading Roche 454 SFF sequence read files in Bio.SeqIO

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri May 22 18:37:21 UTC 2009


           Summary: Reading Roche 454 SFF sequence read files in Bio.SeqIO
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: enhancement
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk

Roche 454 sequencing returns the read data in SFF files, a documented binary
format, capturing the sequence letters and qualities together with trimming
information. It would be nice to support reading (and in the longer term also
writing) these files directly with Bio.SeqIO.

See this thread for background:

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