[Biopython-dev] [Bug 2294] Writing GenBank files with Bio.SeqIO

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue May 5 12:04:09 UTC 2009


------- Comment #14 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-05 08:04 EST -------
Created an attachment (id=1292)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1292&action=view)
Patch to Bio/SeqIO/InsdcIO.py to write GenBank features

This patch adds basic support for writing features in GenBank files.

There is still plenty to do:
* Full testing, both manual and with extended unit test coverage
* Wrapping long feature locations
* Writing references
* Extending to cover writing EBML files

Note that this requires the latest Bio.GenBank code from CVS, as during this
work I found and fixed two small issues with the location parsing.

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