[Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon May 4 15:29:33 UTC 2009


------- Comment #7 from cymon.cox at gmail.com  2009-05-04 11:29 EST -------
(In reply to comment #6)
> Created an attachment (id=1291)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1291&action=view) [details]
> Patch to add keyword arguments, properties and __repr__ to command line
> wrappers
> As in previous patch but with support for clearing parameters by "deleting" the
> property, and some basic doctests in Bio.Application.
> Still need to co-ordinate with Cymon to give the Muscle wrapper a valid python
> identifier as an alias for the -in argument, e.g. "input", because we can't use
> just "in" as a property or keyword argument.

"input" for -in and maybe also "input1" "input2" as alternatives for -in1 -in2,
might the the way to go, and document it.


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