[Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon May 4 10:57:33 UTC 2009


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
Attachment #1288 is|0                           |1
           obsolete|                            |

------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2009-05-04 06:57 EST -------
Created an attachment (id=1289)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=1289&action=view)
Patch to add keyword arguments and properties to command line wrappers

Brad likes the idea, and as the Bio.Application module owner that's good :)

This patch makes a very slight difference to reduce the changes needed to old
code (i.e. in the __init__ method use self.parameters = [...] as before) with
the bonus that the base class and subclasses have the same __init__ signature
(argument list).

This patch also now covers Bio.Align.Applications, Bio.Motif.Applications and
Bio.AlignAce.Applications as well as Bio.Emboss.Applications (i.e. all affected


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