[Biopython-dev] [Bug 2889] setup.py reads stdin even when stdin is not a terminal

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Jul 29 09:47:35 UTC 2009


------- Comment #4 from biopython-bugzilla at maubp.freeserve.co.uk  2009-07-29 05:47 EST -------
(In reply to comment #3)
> The yes/no prompt using raw_input is for solely for installing without
> NumPy (which is still useful, but only a subset of the full Biopython),
> and is only shown if NumPy is not installed. This is a compile time
> dependency for parts of Biopython.
> I've updated CVS and now setup.py will abort if NumPy is not installed
> and we don't appear to be running in a real terminal (based on your
> suggestion).
> Could you test this please?

You need setup.py CVS revision 1.170, which should also be available from
github within the hour: http://github.com/biopython/biopython/tree/master

I could attach the new setup.py to this bug if that would be easier for you.


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